BAC Information

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BAC

Clone NameMSMg01-317I08
Chromosome2 (Build37)
Map Location 89,243,106 - 89,243,766
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1
Downstream geneOlfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317I08.T7 (MSMg01no317_i08.b1)MSMg01-317I08.TJ (MSMg01no317_i08.g1)
ACCAG437563AG437564
length710713
length of high quality
(start - end)		663 (48 - 710)634 (80 - 713)
definitionCHROMAT_FILE: MSMg01no317_i08.b1 PHD_FILE: MSMg01no317_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:32 2005CHROMAT_FILE: MSMg01no317_i08.g1 PHD_FILE: MSMg01no317_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTTACTTCCTTCTTGTCAAATGCTTTCATCTGCAGGTGAATG
TTATACTCATATTTATATGTAAAATAGATATTTCCTAATAGATAAAATTC
TATCCTTTATCCAAATGTTAGTTCAAGAGGTATATTGTGGACCATGTTTA
TATTTTCAATTAAATTAACACAGGTCCGGATTATTTATTATGATTCAATA
CTCACGATTTTGCCAAGGCATAGATCTAAGTACCTAAGATTTAATTTAAA
AACCAAACAACGTAACATCAAGAATTATGTGTTTTGGATTTTCCCATGGT
AAAAGTAACAAAAGAGACAACCCTGGAAGTTAATTAAGTTGCTGATGGCC
ACATAGGTGAGATAATCTGTGAATGTAGTACATTTGGTCCATTGTTCATC
CCTCCATTTCTTCTTTCCAGAATGGATGCCTCCATTATCTGTCACTGTAC
ACACTGGTTTTGAAATGTAGAGTTGTTTTCTGTTCACTATAGTCATTGAA
TTCTTCATTCCAGTTACTACTGCTGGAGGTTTTTCAAGTAAGGAAATTAA
TTGAATAATTGCTGTTATAAAATATATAAAAATAGTTTATTCAAAATAAT
GAAAGAAGGCTTCATTCATGGAATAACTCATTCATGGGCTTCTTCATAGT
TTCATGCATG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGCCTTTAATTTCTTT
CTTAATTTATTCCTTAACCTGGTGGTCACTGATTAAGGAGTTATTCAGTT
TTCATGAGTGTGTAGCTTTCTGTTGTTTTGTTCTTGTTGAAGTCCAGCTT
TAATCCATGTTTATCTGATAAGATAAAAGTGGTTATTTCAATCTTCTTGT
ATCTGTTGAGGCTTGCTTTGTGACTGAGTATATGCACAATTTTGGAGAAG
GTCCTGTGAAGCTGAGAATAAGATATATTTTTTGGTTTTGGGTGAAACGT
TTTATAGATATCTACTAGATCCATTTGATTCGCGTCTGTTAGTTCTGTCA
TATTTCTGTTTAGGTTTTATAACGATGACTATGGTAAGACTGAGGTGTTG
AAGTCTCCCACTATTTTTGAGTTCTTTGTATATATTGGATAATTGCCCTC
TATTGGATGAAGGATTGGTAAAGATATTATCCCAATCTGTTGGTTGCCAT
TTTGTCCAATTGACAGCAGAAAGAAATAAAATGTTTGTTCTCAGCAAAAC
ATCCTCTCATGTGTCTACGTGTCTGCCTCAGCAAAATATCCTCTCATAAG
ACAGTTTCACACATCACATGACACAACTCCAAAAAACCCCAGAAGTTTCC
ACTTTACATATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_i08.b1 MSMg01no317_i08.b1 CHROMAT_FILE:
MSMg01no317_i08.b1 PHD_FILE: MSMg01no317_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:32 2005
         (663 letters)



>mm_chr2_89242999_89244062
          Length = 1064

 Score = 1255 bits (649), Expect = 0.0
 Identities = 658/661 (99%), Gaps = 1/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacttacttccttcttgtc-aaatgctttcatctgcaggtgaatgttatactca 62
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 768 ggaattcacttacttgcttcttgtcaaaatgctttcatctgcaggtgaatgttatactca 709

                                                                       
Query: 63  tatttatatgtaaaatagatatttcctaatagataaaattctatcctttatccaaatgtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tatttatatgtaaaatagatatttcctaatagataaaattctatcctttatccaaatgtt 649

                                                                       
Query: 123 agttcaagaggtatattgtggaccatgtttatattttcaattaaattaacacaggtccgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agttcaagaggtatattgtggaccatgtttatattttcaattaaattaacacaggtccgg 589

                                                                       
Query: 183 attatttattatgattcaatactcacgattttgccaaggcatagatctaagtacctaaga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 attatttattatgattcaatactcacgattttgccaaggcatagatctaagtacctaaga 529

                                                                       
Query: 243 tttaatttaaaaaccaaacaacgtaacatcaagaattatgtgttttggattttcccatgg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tttaatttaaaaaccaaacaacgtaacatcaagaattatgtgttttggattttcccatgg 469

                                                                       
Query: 303 taaaagtaacaaaagagacaaccctggaagttaattaagttgctgatggccacataggtg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 taaaagtaacaaaagagacaaccctggaagttaattaagttgctgatggccacataggtg 409

                                                                       
Query: 363 agataatctgtgaatgtagtacatttggtccattgttcatccctccatttcttctttcca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agataatctgtgaatgtagtacatttggtccattgttcatccctccatttcttctttcca 349

                                                                       
Query: 423 gaatggatgcctccattatctgtcactgtacacactggttttgaaatgtagagttgtttt 482
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaatggatgcgtccattatctgtcactgtacacactggttttgaaatgtagagttgtttt 289

                                                                       
Query: 483 ctgttcactatagtcattgaattcttcattccagttactactgctggaggtttttcaagt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctgttcactatagtcattgaattcttcattccagttactactgctggaggtttttcaagt 229

                                                                       
Query: 543 aaggaaattaattgaataattgctgttataaaatatataaaaatagtttattcaaaataa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aaggaaattaattgaataattgctgttataaaatatataaaaatagtttattcaaaataa 169

                                                                       
Query: 603 tgaaagaaggcttcattcatggaataactcattcatgggcttcttcatagtttcatgcat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tgaaagaaggcttcattcatggaataactcattcatgggcttcttcatagtttcatgcat 109

            
Query: 663 g 663
           |
Sbjct: 108 g 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space:   688262
Effective search space used:   688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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