TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAAGGCGCGGAA
TTCCAGAGGTTGCACAACTTCCTCTCAGACCCCTAAACCTGCATGCTGGC
TGAGCTCTCGGCCATCCTAGTGAGTAATTAAACTGTATTAATAGGCATGC
CATTCAAGAGTTCAATTATGTTAATTAGGCTACAGATGACCTAAAAGCAA
TTCGAGTGTTTAACAATGTCAGTCGAAATCAAAGTTGAAAAAGGAACAGC
CCATTTCAGACTGCAAGTCAAAACAGATTCCTTCCTCTTTTTCCAGAAAA
AACCCACACATCTCATATCTGACAAGCTCGGAGGAGACGTGGCTCTGGTG
GACGGGTGGACATTGATTTGTTTGAACCTGCTAATCCTCTTTATGGAAAT
GCCACTTGGGCGCCCCCGCCCCAACCAATTCCAATAAGGTAAAAAGTAAA
GGAGGAAACCGATTTCTCAGAGCTTTTGCGTGCTGACTTTATCACTGTTC
GTATACATATTAATACTTAACTCTTTTGATCAGGCATACATGCAGAAGGG
GTGCAGTCAAGAAACATGAGAAGATTTGTGAAACCCTTCCCAATACCTCT
AGTTCCCAGTTCCTGGCCTTTACCCACAGATGGCTTATACATTATTTTAA
ATGTTAGCATAAGATACTAACTGTTCTATGTTTGATTTACACACACACAC
ACACACACACACACACACACACACACACACACACACACCCGCCCCTACN

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTAAGAGGACTAATTGCAGAAAGA
CTCCTGAGACCAGCAGTGAGACATGCGCCTCCTTTCTTAGGAGAGAAGTA
TTCAGTGCAGCACACAGCTGCTTTGTAAATCAGATCATTTAATAATTTCT
GGAAAAAGCCATAGAATTTAAATCTATCTTTCTTGTGACATAGATTTTTT
TTCCAATATTACCAAGATCCACAGATATAGAAGGAAAGAAACAGAACATT
TAAAAGCTTGAAGGGTTATTTATAAATTTCAGCAAAAACCTTGTTTTTAA
TCACTAAATTATAATTAAGAAATGATACCATTTTTTTTTCTGAGATTAAT
GTCTTGTAATTTTACTGACACCCCAACTTCCTAAATCTTAATGTAGCCAA
GCCCATAAGCAGACTCCTGGCTTCATTGGCTTTCTTTTCTGGGTGCCTCA
TTTAGTTCTTAAGCTAGGTTTATGAAATCCAAAAATAAACAGCCAATGCA
ATTGCCAAATGTTTAATCCTATTTAAAAGTAAAAATATATATATTGTATG
TTTGAAAAGTGCGACTCTGTGAAGAACATACTAACCTTTCCCCAAACGTT
GATTTTGCAGTAGGTATTGGAAATCTACAAAGGACATCCAGCCAGCGAAG
CACCCTTACATACCAAAGAAATAACTATGCCCTGAACACAGCAGCTACCT
ATGCGG

Query= MSMg01no317_p15.b1 MSMg01no317_p15.b1 CHROMAT_FILE:
MSMg01no317_p15.b1 PHD_FILE: MSMg01no317_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:03 2005
         (304 letters)



>mm_chr2_59331160_59331863
          Length = 704

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaattccaataaggtaaaaagtaaaggaggaaaccgatttctcagagcttttgcgtgc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 465 accaattccaataaggtaaaaagtaaaggaggaaactgatttctcagagcttttgcgtgc 406

                                                                       
Query: 61  tgactttatcactgttcgtatacatattaatacttaactcttttgatcaggcatacatgc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgactttatcactgttcatatacatattaatacttaactcttttgatcaggcatacatgc 346

                                                                       
Query: 121 agaaggggtgcagtcaagaaacatgagaagatttgtgaaacccttcccaatacctctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agaaggggtgcagtcaagaaacatgagaagatttgtgaaacccttcccaatacctctagt 286

                                                                       
Query: 181 tcccagttcctggcctttacccacagatggcttatacattattttaaatgttagcataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcccagttcctggcctttacccacagatggcttatacattattttaaatgttagcataag 226

                                                                       
Query: 241 atactaactgttctatgtttgatttacacacacacacacacacacacacacacacacaca 300
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 225 atactaactgttctatgtttgatttatacacacacacacacgcacacacacacacacaca 166

               
Query: 301 caca 304
           ||||
Sbjct: 165 caca 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no317_p15.g1 MSMg01no317_p15.g1 CHROMAT_FILE:
MSMg01no317_p15.g1 PHD_FILE: MSMg01no317_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:04 2005
         (343 letters)



>mm_chr2_59148965_59149707
          Length = 743

 Score =  632 bits (327), Expect = 0.0
 Identities = 339/343 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaagaggactaattgcagaaagactcctgagaccagcagtgagacatgcgcctcctt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctctaagaggactgattgcagaaagactcctgagaccagcagtgagagatgcgcctcctt 260

                                                                       
Query: 61  tcttaggagagaagtattcagtgcagcacacagctgctttgtaaatcagatcatttaata 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tcttaggagagaagtattcagtgcagcacacagctgctttgtacatcagatcatttaata 320

                                                                       
Query: 121 atttctggaaaaagccatagaatttaaatctatctttcttgtgacatagattttttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttctggaaaaagccatagaatttaaatctatctttcttgtgacatagattttttttcc 380

                                                                       
Query: 181 aatattaccaagatccacagatatagaaggaaagaaacagaacatttaaaagcttgaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatattaccaagatccacagatatagaaggaaagaaacagaacatttaaaagcttgaagg 440

                                                                       
Query: 241 gttatttataaatttcagcaaaaaccttgtttttaatcactaaattataattaagaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gttatttataaatttcagcaaaaaccttgtttttaatcactaaattagaattaagaaatg 500

                                                      
Query: 301 ataccatttttttttctgagattaatgtcttgtaattttactg 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataccatttttttttctgagattaatgtcttgtaattttactg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)