CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANAAATACGCGGAA
TTCAAAGACACTTCACTACATTGCAAATTCAAGTCATCCCAAGTTATAAG
ACATTGTTTTCAAATAACCAAACCCAAACAAAATAAAATCTTAAAATGCA
TATGTTTCAAAAGGAAGAAATGACACTGTCCCCATTTTAAAATGACACAT
TTTTTAATAAATGAAATCCAGCCCTAGGAGGGGAATTTACAAAATAAACA
CTAGTGGTATGCCTCAAAAATTCCCTCTCAGATTAGAAATCTAGGATAAC
TGTCTGCAGACTTTGTCTGTTACTTGCTAGTCTCCCAAATGTGGGCCTGA
CCTTCAGTTAGTCTTAGCCATCCATTCATCCATCCATCCATCCATCCATC
CATCCATCCATCCATCCATCCACCCATGTGTTATTAAGCTGCTTTCTCCT
AGGTCAAGTATATTATATATATTAACAGCTTACACTTCCATAGTTCTGAG
TTCTACAAAGATTATCACACTCTGCCTGGCTATAGAGAACTCACACAACT
GCAATGCCAGCTGGCCTGGATGCCAGTGTGCTGACTGAATTTCGACAGTA
CAAACTGCATACATTTCAGATGTTATGGCATACCTCCTTACCAGTGGCTG
GCATCCTCCGAATAACAACGAACTAGTAACCGAGTTTTGTTAAATCAAGC
ATCTACTGATTTACTTAGCG

CCCAAGAGGTCCCNNNNNNNCCCATGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTC
ATGGCAATTACTATGAAATGAATCAGAAGAGCACTTTCGCGGTGGCACTC
CATTTCCCCCGAAAGGAACAAAAGGCAACCATAATTTAAGTTTTATTTTT
CAAAACCTCCGGGTAGGAACCGGATCCCAATCCGCGGAATGGGGAAAAGG
GTCTATAAACCCCAAATTTTCGGGGGAATAGGGGGGCCCCCTCTCCCAAA
AACCGTGAAAGATCGGGGGACACCTCGGCGTGGGGGGAAAGATATCCCCC
AAAACTCCTTCTTCAGAGGGGCCCCGCGAGCCCCCCCCCGCTATTCCGCG
CGGGGTGTTTTTCTGCCTCGTTAGATACCGTTCCGCTTTTTCTCCCCTCT
CGCCTTGGCGTGACTACAGGCAGCTTCTGTACCCTGCGAACGGGTGCCGA
GCGCTACGTATTATATTTCCCCCTCGCATATTCTCTTGTGCGCCCCGTTC
GCTTACCCCCCCTACCGTATCCGCTTTTACGCTCGTCTAGGCGGCACGCC
TTTCACGCGCGTCCACTCGTTTTCGCGGACATCTTCTGGCTCTCGGCCGT
TCCACCCGCGTTTTTCTTTTCGGGGGGCTCTCCGCTATTAATTACGCTCT
CTTAGACACCGCGGCTTGAAN

Query= MSMg01no318_c01.b1 MSMg01no318_c01.b1 CHROMAT_FILE:
MSMg01no318_c01.b1 PHD_FILE: MSMg01no318_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:14 2005
         (427 letters)



>mm_chr2_139739265_139740087
          Length = 823

 Score =  698 bits (361), Expect = 0.0
 Identities = 402/427 (94%), Gaps = 20/427 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattgcaaattcaagtcatcccaagttataagacattgttttcaaataaccaaacccaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 acattgcaaattcaagtcatcccaagttataatacattgttttcaaataaccaaacccaa 260

                                                                       
Query: 61  acaaaataaaatcttaaaatgcatatgtttcaaaaggaagaaatgacactgtccccattt 120
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaataaaatcttaaaatgcatacatttcaaaaggaagaaatgacactgtccccattt 320

                                                                       
Query: 121 taaaatgacacattttttaataaatgaaatccagccctaggaggggaatttacaaaataa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaatgacacatttttaaataaatgaaatccagccctaggaggggaatttacaaaataa 380

                                                                       
Query: 181 acactagtggtatgcctcaaaaattccctctcagattagaaatctaggataactgtctgc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 acactagtggtatgcctcaaaaattccctctcagattagtaatctaggataactgtctgc 440

                                                                       
Query: 241 agactttgtctgttacttgctagtctcccaaatgtgggcctgaccttcagttagtcttag 300
           |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactttgt----tacttgctagtctcccaaatgtgggcctgaccttcagttagtcttag 496

                                                                       
Query: 301 ccatccattcatccatccatccatccatccatccatccatccatccatccatccacccat 360
           ||||||||    ||||||||||||||||||||||||||||||||||||            
Sbjct: 497 ccatccat----ccatccatccatccatccatccatccatccatccat------------ 540

                                                                       
Query: 361 gtgttattaagctgctttctcctaggtcaagtatattatatatattaacagcttacactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgttattaagctgctttctcctaggtcaagtatattatatatattaacagcttacactt 600

                  
Query: 421 ccatagt 427
           |||||||
Sbjct: 601 ccatagt 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 823
Length adjustment: 9
Effective length of query: 418
Effective length of database: 814
Effective search space:   340252
Effective search space used:   340252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)