BAC Information

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BAC

Clone NameMSMg01-318H06
Chromosome2 (Build37)
Map Location 87,089,684 - 87,090,027
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767
Downstream geneOlfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318H06.T7 (MSMg01no318_h06.b1)MSMg01-318H06.TJ (MSMg01no318_h06.g1)
ACCAG438252AG438253
length770765
length of high quality
(start - end)		374 (46 - 419)344 (71 - 414)
definitionCHROMAT_FILE: MSMg01no318_h06.b1 PHD_FILE: MSMg01no318_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:38 2005CHROMAT_FILE: MSMg01no318_h06.g1 PHD_FILE: MSMg01no318_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATACCGCGGAA
TTCTCCCACTATTATTCGNGTGAGGTACAATGTGTGCTTTGAGCTTTACT
AAAGTGTCTTTAATGAATGTGGCTGCCCTTGTATATGGAGCATAGATATT
CAGAATTAATAGTTCCTCTTGGAGGATTTTACCTTTGATGAGTATGAAGT
GTCCCACCTTGTCTTTTTTGATGACTTTGGGTTGGAAGTCGATTTTATTA
TATATTAGAATGGCTACTAAAGCTTGTTTGTTCATACCATTTGCTTGGAA
AATTGCTTTCCAGCTGTTCATTCTGGGGTAGTTTCTATCTTTTTCTCTGA
GATGAGTTTCCTGTAAGCAGCAAAATGTTGGGTCTTGTTTGTGTAGCCAG
TTTGTTAGTCTATGTCTTCCCACCGCCCAGTTGAGTCCATTGATATTAAC
AGATATTAAGGAAAAGTAATTGTTGCTTCCTGTTATTTTTGTTGTTTAAG
TTGGCATTCTGTTCTTGTGGTGTCTTCTTTTAGGGTTGTTGAGGGATTAC
CTTCTTTCTTTTTCTAGGGTGTGGATCTCGTTCTTGTATTGCTTTTTTTT
TTCTGTTATTATCCTTTGAAGGGCTGGATTTGTGGAAAGATAATGCGTGA
TTTTGTTTTGTTGTGGAATACTTTAGTTTCTCCATCTATGGTAATTTGAG
AGTTTGGCTTGGTATAATAGCCTGGGCTTGTATTTGTGTTCTCTTATTGT
CTGTATAACATCTGGCCAGG

TGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACCAATACAATTATGTCGCCTTCTAATAAC
TTGAGATATGGAACTGTATTATAACACCTTGCTTTATGGAAATTTTTTAG
ACTTCTTTTCTTTCTGTAGAATAAATAGTGAGGACACAAACAACTTATTT
TCCCCTTATAAAACTATATAATTTAATTAATAAACATTTAACTCGCTTCT
ATGTATACAAATCAATGGCAATCCTCACAAGAAACATGATGGCTTCTCTA
ACAGCTACACATGCATTGTGTTCTACATATTTAGGAGTAAACAACATGTA
AAAAAAGAATAAAGTGAGTAGTAGAAGACTTTTAAGCTGACATGCATGGA
TTCTGAACTAGAACTCACCCGCTAAAAATAATCTATTGAGTCAATAAATA
CATAGAAATAACTGGTTACATAAAGAATGAATATTCGGGGGATAAATCTG
GAAAAATAGCTCAATGATAAGGGAAGTTGCTACAAAAATTGATGGTTTGA
GTTCAATCCCTGGATTCCACATGATGTTGTGTATAACACATATCGCTTAT
CCAACCTAAACACACACACACACACACACACACACACATACACACACTCA
CACTCTCACTACTGAGAGAGAGAAGCCTGAGAGAGACCTAATATAAATTT
TAAAATAGGTTGAAATGGAATAACCTTGTGTATTTCATCAATAAAAGGGA
ATTTAAATATTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_h06.g1 MSMg01no318_h06.g1 CHROMAT_FILE:
MSMg01no318_h06.g1 PHD_FILE: MSMg01no318_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:38 2005
         (344 letters)



>mm_chr2_87089484_87090227
          Length = 744

 Score =  665 bits (344), Expect = 0.0
 Identities = 344/344 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaatacaattatgtcgccttctaataacttgagatatggaactgtattataacacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaatacaattatgtcgccttctaataacttgagatatggaactgtattataacacctt 260

                                                                       
Query: 61  gctttatggaaattttttagacttcttttctttctgtagaataaatagtgaggacacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttatggaaattttttagacttcttttctttctgtagaataaatagtgaggacacaaa 320

                                                                       
Query: 121 caacttattttccccttataaaactatataatttaattaataaacatttaactcgcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacttattttccccttataaaactatataatttaattaataaacatttaactcgcttct 380

                                                                       
Query: 181 atgtatacaaatcaatggcaatcctcacaagaaacatgatggcttctctaacagctacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtatacaaatcaatggcaatcctcacaagaaacatgatggcttctctaacagctacac 440

                                                                       
Query: 241 atgcattgtgttctacatatttaggagtaaacaacatgtaaaaaaagaataaagtgagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcattgtgttctacatatttaggagtaaacaacatgtaaaaaaagaataaagtgagta 500

                                                       
Query: 301 gtagaagacttttaagctgacatgcatggattctgaactagaac 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagaagacttttaagctgacatgcatggattctgaactagaac 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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