Query= MSMg01no318_p20.b1 MSMg01no318_p20.b1 CHROMAT_FILE:
MSMg01no318_p20.b1 PHD_FILE: MSMg01no318_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:16 2005
(696 letters)
>mm_chr2_41854963_41856059
Length = 1097
Score = 1265 bits (654), Expect = 0.0
Identities = 685/696 (98%), Gaps = 3/696 (0%)
Strand = Plus / Minus
Query: 3 ggaattcaggtag--aatttcattttaatcattcaaagctacacggttattttcaggaaa 60
||||||||||||| |||| | |||||||||||||||||||||||||||||| |||||||
Sbjct: 897 ggaattcaggtagaaaattac-ttttaatcattcaaagctacacggttatttgcaggaaa 839
Query: 61 gcgaagaagatagcataactttaaaaaactctggaaagttaattatatcaaaggaaagct 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gcgaagaagatatcataactttaaaaaactctggaaagttaattatatcaaaggaaagct 779
Query: 121 agtgcgatcctacttttcctcttctaagtgagctttaaatggctttgcaacttacataat 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agtgtgatcctacttttcctcttctaagtgagctttaaatggctttgcaacttacataat 719
Query: 181 ggattactgatgccagagttactgctgagttgttatttttccttcaaatcctcttaccaa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 718 ggattactgatgccagagttactgatgagttgttatttttccttcaaatcctcttaccaa 659
Query: 241 ggtttttatttgtgctatatcccatgctacttgctaagcttagggctgaacaccaccatg 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 658 ggtttttatttgtgctatatcccatgctacttgctaagctgagggctgaacaccaccatg 599
Query: 301 agagatgggtacgcaggaggcagatataggaagtgagattcctgttatcccacaagtaga 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agagatggatacgcaggaggcagatataggaagtgagattcctgttatcccacaagtaga 539
Query: 361 ttgttttgaccattcgaaggaagtcctcccttttaaaatttatcagttaggatgacctaa 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttgttttgaccatttgaaggaagtcctcccttttaaaatttatcagttaggatgacctaa 479
Query: 421 tttgattgtactttctgtgagaatatatcaaactatggcatcagagaccgaggaaaggtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tttgattgtactttctgtgagaatatatcaaactatggcatcagagaccgaggaaaggtt 419
Query: 481 tgaatgtgaaagcctggtgttggctttccttgatcaattgctcagtaaaagttcttctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgaatgtgaaagcctggtgttggctttccttgatcaattgctcagtaaaagttcttctcc 359
Query: 541 ccccagccccctttggcgcaagggtacactgtgcatagatgtgctgtttgatctcaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccccagccccctttggcgcaagggtacactgtgcatagatgtgctgtttgatctcaggct 299
Query: 601 tgttgtcaagcaggttgactaagttaaaagctgtgctgttttaacaaattctaaagtata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgttgtcaagcaggttgactaagttaaaagctgtgctgttttaacaaattctaaagtata 239
Query: 661 ggacatcaaaagaattatgtttcctcctcctgaaag 696
||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggacatcaaaagaattatgtttcctcctcctgaaag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1097
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1087
Effective search space: 745682
Effective search space used: 745682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no318_p20.g1 MSMg01no318_p20.g1 CHROMAT_FILE:
MSMg01no318_p20.g1 PHD_FILE: MSMg01no318_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:16 2005
(641 letters)
>mm_chr2_41673208_41674248
Length = 1041
Score = 1075 bits (556), Expect = 0.0
Identities = 601/636 (94%), Gaps = 31/636 (4%)
Strand = Plus / Plus
Query: 5 ggttcaatagccactgtgcagagctcagtaagatactgaacaagcagcctcatacagcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggttcaatagccactgtgcagagctcagtaagatactgaacaagcagcctcatacagcta 264
Query: 65 atccttctaattcacttgacttttgccaggcaaaagtcttatcttcagcctaacatgttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atccttctaattcacttgacttttgccaggcaaaagtcttatcttcagcctaacatgttt 324
Query: 125 atttgataacagtggctcagcaagaatatgaattattatttagagataaagtaatgctag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgataacagtggctcagcaagaatatgaattattatttagagataaagtaatgctag 384
Query: 185 caaattgaatttatgaataaatgcttttcaattttctttttgatcatgaacaaagaattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaattgaatttatgaataaatgcttttcaattttctttttgatcatgaacaaagaattc 444
Query: 245 atgttaggagtattttcaccatgtagaaggcagatgaatttcatcatgtaagggtacaca 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 atgttaggagtattttcaccatgtagaaggcagatgaatttcatcatggaagggtacaca 504
Query: 305 ggactttcactatgtagcaagcaagtgacttttcccatgtagcaccaagataatttcaaa 364
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ggactttcactatgtagcaagcaagtgacttttcccatgtagcaataagataatttcaaa 564
Query: 365 tttcatcaaagagagagcaaaggtatctaaataggtgtgtctgcaagcaaatgcaaacca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcatcaaagagagagcaaaggtatctaaataggtgtgtctgcaagcaaatgcaaacca 624
Query: 425 tcatatttcaaatgaagtgcaacagaagaacttctgaaaaaatatgtacatagactgaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcatatttcaaatgaagtgcaacagaagaacttctgaaaaaatatgtacatagactgaag 684
Query: 485 aataccaacacttctgaggtaaaagatatatatatatatatatatatatatatatatata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aataccaacacttctgaggtaaaagatatatatatatatatatatatatatatata---- 740
Query: 545 tatgtatatattatatatatatatataattcaaaaattgacaaatataaaagtacaaaaa 604
|||||||||||||||||||||||||||||||||
Sbjct: 741 ---------------------------attcaaaaattgacaaatataaaagtacaaaaa 773
Query: 605 atctttggtttgggcttattttttttagagagataa 640
| ||||||||||||||||||||||||||||||||||
Sbjct: 774 acctttggtttgggcttattttttttagagagataa 809
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 517 tatatatatatatatatatatatatatatat 547
|||||||||||||||||||||||||||||||
Sbjct: 740 tatatatatatatatatatatatatatatat 710
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 515 tatatatatatatatatatatatatatatat 545
|||||||||||||||||||||||||||||||
Sbjct: 740 tatatatatatatatatatatatatatatat 710
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 513 tatatatatatatatatatatatatatatat 543
|||||||||||||||||||||||||||||||
Sbjct: 740 tatatatatatatatatatatatatatatat 710
Score = 60.7 bits (31), Expect = 4e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 511 tatatatatatatatatatatatatatatat 541
|||||||||||||||||||||||||||||||
Sbjct: 740 tatatatatatatatatatatatatatatat 710
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 739 atatatatatatatatatatatatatatat 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 6
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
