CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTGTGTATATCAACCAGATTTTCTGTATCCATTTTCTGTCATGGG
ACATCTATATTGTTTCCAGCTTCTCGGCTGTCACAAACTGGGCCAATATG
AATATAGTGGAACATGTGCCCCTGTTGCATGGTATATTACTAACAGGGGT
ATTACTGAATCTTTAGATAGAATTATTTCTACCAGACTGATTTAGAGAGT
TGTTGTACCAGCTTGCAATCACAAGCATTCCTCTTTCTCTACATTCTCAC
CAGCATCTTCTCTCACATGAATTTTTGATCTGGTATGAGGTGGAATCTAA
GGGTTGTTTTGATTTGCATTTCCCTAATGACTGAGGATGACCTAACATTT
CTGTAGGTGCTTCTTGGCCACCCCACCTTCATCAGTTGAGAATTCTGTTT
AGCGCTGTTCCCCATTTTTTAATAGGGTTATTTGGTTTTCTGGAGTCTAA
CTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATTGGATATAG
GGTTGGTAAAGGTCTTTTCTCAATCTGTATATTATCATTTTTGTCCCAGA
GACAGTGTCCTTTGCTTTACAGAAGTTTTTCAATTTTCTGAGATCCCATT
TGTCAATACTTGATCTTAGAGCCTAAGCCATTGGTGTTCTGTTCAGAAAT
TTTCCCATGTGCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATATACTAAGGAAATGCCTCTCCCCTAA
AAGGACAAATGAGGGACATTTGTAAGACATTAGCATTCAGTTCTACACAG
AGTATATCTAGAATAATCATATATATTCAGGTTTATATTTTCTCCTTGAA
GATGTTCCTTTTTAAAATATATCCCAATACTAGTGATTATTAATAAATAA
TGGACAACTAAAGGCTTTGATACTAAAAAAATTCAATCAGTAGAACTATA
CTATTCGATTAGAATATAAAACATTTTAATTTTAATTAACTAGCTACAAA
TATGGAGGAATATATTACATTGTAATATATATTACAATGCTAGGGATCAA
GAGAAGGACTTCACACATCGCCCACCACTCTGCTACCTAGCTCTATCCTT
AAAGCCCCCTCCAATTTTTTAAAAGTAATTTGATATTTCAAAATAATTTC
ATCGGTTAGAAATACTCCATTGTAATATAAAAGCATGAATGTAAAGGTGA
TAAAGAGAATAGCAGAAAGAAGCTAAAGGCTTCATTTCAAAGAGTTGGAA
TTTAAGATAATAATGACATTCAATATACTGACATTTTTTTTTAAATTTCC
TTATGGTAAGACTGGTAGTTTTATTCAAAATACCTAAAGATATAACACAA
ATGGAATGCAGACTA

Query= MSMg01no319_h24.g1 MSMg01no319_h24.g1 CHROMAT_FILE:
MSMg01no319_h24.g1 PHD_FILE: MSMg01no319_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:51 2005
         (637 letters)



>mm_chr2_41311767_41312809
          Length = 1043

 Score = 1100 bits (569), Expect = 0.0
 Identities = 621/641 (96%), Gaps = 6/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatactaaggaaatgcctctcccctaaaaggacaaatgagggacatttgtaagacatta 60
           ||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 201 atatactaaggaaatgcttctcccataaaaggacaaaggagggacatttctaagacatta 260

                                                                       
Query: 61  gcattcagttctacacagagtatatctagaataatcatatatattcaggtttatattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcattcagttctacacagagtatatctagaataatcatatatattcaggtttatattttc 320

                                                                       
Query: 121 tccttgaagatgttcctttttaaaatatatcccaatactagtgattattaataaataatg 180
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttgaatatattcctttttaaaatatatcccaatactagtgattattaataaataatg 380

                                                                       
Query: 181 gacaactaaaggctttgatactaaaaaaa-ttcaatcagtagaactatactattcgatta 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gacaactaaaggctttgatactaaaaaaaattcaatcagtagaactatactattcgatta 440

                                                                       
Query: 240 gaatataaaacattttaattttaattaactagctacaaatatggaggaatatattacatt 299
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gaatataaaacattttaattttaattaactagctacaaatatggatgaatatattacatt 500

                                                                       
Query: 300 gtaatatatattacaatgctagggatcaagagaaggacttcacacatcgcccaccactct 359
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 501 gtaatatatattacaatgctagggatcaagagaaggacttcacacattgcctaccactct 560

                                                                       
Query: 360 gctacctagctctatccttaaagccccctccaattttttaaaagtaatttgatatttcaa 419
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gctacctagctctatccttaaagctccctccaattttttaaaagtaatttgatatttcaa 620

                                                                       
Query: 420 aataatttcatcggttagaaatactccattgtaatataaaagcatgaatgtaaaggtgat 479
           ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 aataatttcattggttagaaatactccattgtaatataaaaggatgaatgtaaaggtgat 680

                                                                       
Query: 480 aaagagaatagcagaaagaagctaaaggcttcatttcaaagagttggaatttaagataat 539
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 aaagagaatagcagaaagaagctaaagggttcatttcaaagagttggaatttaagataat 740

                                                                       
Query: 540 aatgacattcaatatactgacatttttttttaaa-----tttccttatggtaagactggt 594
           ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||
Sbjct: 741 aatgacattcaatatactgacatttttttttaaaaaaaatttccttatggtaagactggt 800

                                                    
Query: 595 agttttattcaaaatacctaaagatataacacaaatggaat 635
           |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 agttttattccaaatacctaaagatataacacaaatggaat 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1043
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1033
Effective search space:   647691
Effective search space used:   647691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)