Query= MSMg01no320_d06.b1 MSMg01no320_d06.b1 CHROMAT_FILE:
MSMg01no320_d06.b1 PHD_FILE: MSMg01no320_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:40 2005
(239 letters)
>mm_chr4_84167359_84167998
Length = 640
Score = 426 bits (220), Expect = e-124
Identities = 235/240 (97%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 1 gcttgagtcagagaccttctgggcaacagcatgagacactgtccaaaatcctaggcaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttgagtcagagaccttctgggcaacagcatgagacactgtccaaaatcctaggcaaga 260
Query: 61 aaggtcagcgctgaagggtcttatccaaggtcacgtgacaggggaggttcctgaatgaca 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aaggtcagcgctgaagggtcttatccaaggtcacgtgacgggggaggttcctgaatgaca 320
Query: 121 tcacagcaggagcatccacactcagggccagtccgttatcccaggaagctcccaatatgc 180
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tcacagcaggagcatccgcactcagggccagtttgttatcccaggaagctcccaatatgc 380
Query: 181 ta-tggctggcaaaagggacaaaaaagcgctcaaaggacagacactgatttgtttttaat 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatggctggcaaaagggacaaaaaagcgctcaaaggacagacactgatttgtttttaat 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space: 145130
Effective search space used: 145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no320_d06.g1 MSMg01no320_d06.g1 CHROMAT_FILE:
MSMg01no320_d06.g1 PHD_FILE: MSMg01no320_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:40 2005
(283 letters)
>mm_chr2_163450680_163451364
Length = 685
Score = 317 bits (164), Expect = 4e-91
Identities = 257/292 (88%), Gaps = 14/292 (4%)
Strand = Plus / Plus
Query: 3 ttcacagcacagctgtagttcatggtaaaacacaaaaaatgttccctttgtgctatagcc 62
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 197 ttcacagcacagctgtagttcatgttaaaacac-aaaaatgttccctttgtgctatagcc 255
Query: 63 ttacaaataaacatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta-------a 115
|||||||||||||| || | ||||||||||||||||||| | | | | | || |
Sbjct: 256 ttacaaataaacat-atatatgtgtgtgtgtgtgtgtgtatatatatatatatatatata 314
Query: 116 -atatatgaatgctcagattctgcaccaagccttattcaatcttgccttttgatataaac 174
||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct: 315 tatatatgaaagctcagattctgcatcaagcattactcaatcttgccttttgatataaac 374
Query: 175 ctgaatacagctaaat-tgcaaagcgttcacttaatagtctagttgatgaaacgtaaaat 233
||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 375 ctgaatacagccaaatctgcaaagcgttcacttaatagtctcgttgatgaaacgcaaaat 434
Query: 234 ggatatgcactttcttgaaa-ggagactttg-tcagctgtagcagtgtcctt 283
||||||||| |||| |||| ||||||| || |||||| || ||||||||||
Sbjct: 435 ggatatgcattttca-gaaaaggagactctggtcagctttatcagtgtcctt 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space: 185224
Effective search space used: 185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
