BAC Information

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BAC

Clone NameMSMg01-320F06
Chromosome2 (Build37)
Map Location 107,359,691 - 107,360,232
singlet/doubletsinglet
Overlap genenone
Upstream gene9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320F06.T7 (MSMg01no320_f06.b1)MSMg01-320F06.TJ (MSMg01no320_f06.g1)
ACCAG439590AG439591
length836759
length of high quality
(start - end)
89 (124 - 212)540 (77 - 616)
definitionCHROMAT_FILE: MSMg01no320_f06.b1 PHD_FILE: MSMg01no320_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:49 2005CHROMAT_FILE: MSMg01no320_f06.g1 PHD_FILE: MSMg01no320_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAATTATTCTGTCAAGATCTTATAAGAACCTTCTATTTAAAAAAAA
AAAAAAAGAACCTTCTATTTCAACATGAGAGTACTAAAAGGAAGCACAAT
GAAAGAAAAAAGAAAGAAAGAAAGAGAGAGAGGGGGGAGGGGAGGGAGGG
AGGGAGGGACCTCCCCCTTCTTTTTTTCCCTCCCCCCCTTTTCCTCTTTT
TTTCCTTTCTTTCTTCCTTTCCTTCCCCCTCCTCTTTCTTCCCTCCTCTT
TCCCCTTCCCCTTCTTTTTTTTCTCTATTCCCCGGCTTTCTCTGCCCCCC
CTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCGCGGGNGGGGGGGGGNCGG
GAGTGTGGTGTTCTGCCCGTCTAAAAAAAAAAAAAATATCTCTTGTTGGG
GGGTGGCCTCCTCCCGTTTTTTTTTTTTCCCTCGCCATGTTTGTTCCCCT
ATTGGTGATTTGCTTTACCCGCTGGAACCGTTTACACCGTCACCCCCCCT
CGTTCCTCGGGTATAATACGTCCTTAGCTCCCCTTTTTCGCTCCGCCCAT
TGTGTCTTTATCCCATCTTACTCTCAGGGGCCGTTGCAATCTTCACCTTG
TCCCCCGTTCTCCCCCTTTTGTCTCCTCTCCCCCTCTTTGGTCTCCACCA
TTGCCCCCTTTTATTTCCCCTTGATGCGCTCTTTTGCCCCCTTTTCTCCC
CATGTTACACTCACCTACTCAAATTACTATCTATATATTGGTCGTCTTGC
TGTAGTTACTGGTGCTAGTCTTCTCTGTCCCCACCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCACCCACTCCATTCTCCTCC
TCCTCATACACTGCTCATCTCTCCTAGTGATAACTGCGTTAGGTTTGTCT
GTTAGTTCAGGCACACACAAACATGGCTCAAGCTTAGTCATCTCAAATTA
GATATTGAGATCTTGCTATACCTTGGGAAGAGGGGCTGAAAGAGTTAATG
TAGATGAGGCCTTGCCTGCAGCCTATCTTCTCTGAAAGACTGTTAAAATA
ATTTTATGTATGTACCAAGATTACATTTTCTGTGCTGTTGGGCTTTGCTG
TGTGTCTCTGGTTTATTTTCTTGCCAGCTCACTAAGCCCTTTGGTGTTAA
GGAGCTGGTAACCTAGGAAATAATGTGGGGGAAGAAGGCTTTGGAGGTGC
TCAGTTGCCAGTGTGATTGTCAGCCTGGTGGGCCGACTCTGAGGTAGTAG
GTGTGTGTGAGGGTGGGTGAGGGTGCTGTGAGCTTGCTTGCCTTTGGTTG
CCGGAGTGCTGGCACAGGAGTGTGGGTGTGATTGCAGTGAGTGATGCACG
CAGGGTAATTGTCAGGCACCTCAGATTTTCTCCCTCTGCCTTTTTTTGCT
TCTTTTTCTCCCTCTAATTTATAGCACGCAAAGAAATCCTCTGCTGCATC
AACGAGGTGATATTTTTGAAAAAGTTCCAAGGGCATGAATTATATGCTGT
TTCACTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_f06.g1 MSMg01no320_f06.g1 CHROMAT_FILE:
MSMg01no320_f06.g1 PHD_FILE: MSMg01no320_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:49 2005
         (540 letters)



>mm_chr2_107359491_107360432
          Length = 942

 Score =  998 bits (516), Expect = 0.0
 Identities = 535/542 (98%), Gaps = 2/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcacccactccattctcctcctcctcatacactgctcatctctcctagtgataactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcacccactccattctcctcctcctcatacactgctcatctctcctagtgataactg 260

                                                                       
Query: 61  cgttaggtttgtctgttagttcaggcacacacaaacatggctcaagcttagtcatctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgttaggtttgtctgttagttcaggcacacacaaacatggctcaagcttagtcatctcaa 320

                                                                       
Query: 121 attagatattgagatcttgctataccttgggaagaggggctgaa--agagttaatgtaga 178
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 321 attagatattgagatcttgctataccttgggaagaggggctgaaagagagttaatgtaga 380

                                                                       
Query: 179 tgaggccttgcctgcagcctatcttctctgaaagactgttaaaataattttatgtatgta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggccttgcctgcagcctatcttctctgaaagactgttaaaataattttatgtatgta 440

                                                                       
Query: 239 ccaagattacattttctgtgctgttgggctttgctgtgtgtctctggtttattttcttgc 298
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 441 ccaagattacattttctgtgctgttgggctttgctgtgtgtctctggggcattttcttgc 500

                                                                       
Query: 299 cagctcactaagccctttggtgttaaggagctggtaacctaggaaataatgtgggggaag 358
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttcagtaagccctttggtgttaaggagctggtaacctaggaaataatgtgggggaag 560

                                                                       
Query: 359 aaggctttggaggtgctcagttgccagtgtgattgtcagcctggtgggccgactctgagg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggctttggaggtgctcagttgccagtgtgattgtcagcctggtgggccgactctgagg 620

                                                                       
Query: 419 tagtaggtgtgtgtgagggtgggtgagggtgctgtgagcttgcttgcctttggttgccgg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtaggtgtgtgtgagggtgggtgagggtgctgtgagcttgcttgcctttggttgccgg 680

                                                                       
Query: 479 agtgctggcacaggagtgtgggtgtgattgcagtgagtgatgcacgcagggtaattgtca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgctggcacaggagtgtgggtgtgattgcagtgagtgatgcacgcagggtaattgtca 740

             
Query: 539 gg 540
           ||
Sbjct: 741 gg 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 942
Length adjustment: 10
Effective length of query: 530
Effective length of database: 932
Effective search space:   493960
Effective search space used:   493960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)