BAC Information

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BAC

Clone NameMSMg01-320L11
Chromosome2 (Build37)
Map Location 93,232,476 - 93,404,197
singlet/doubletdoublet
Overlap geneLOC639658, Cd82
Upstream geneMapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789
Downstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L11.T7 (MSMg01no320_l11.b1)MSMg01-320L11.TJ (MSMg01no320_l11.g1)
ACCAG439879AG439880
length699691
length of high quality
(start - end)
226 (124 - 349)281 (58 - 338)
definitionCHROMAT_FILE: MSMg01no320_l11.b1 PHD_FILE: MSMg01no320_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:17 2005CHROMAT_FILE: MSMg01no320_l11.g1 PHD_FILE: MSMg01no320_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,232,476 - 93,232,698)(93,403,920 - 93,404,197)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AAATTCACTTGGTCTACACCTTGCTCAGAATATTGTGTCAACTTTGGAAA
AGCAAGAATTTTGTCTGAAAAATTTTCATGCTTGTGGCTTGGGTGTCAGG
GTTATACTAACTTCAGCACCGTGTGCTGCGGGGTCGCCTCTTCTATTCTG
ACCTCTTTAATGTGCTAAGTGTGCTATGTAACATTGGATCACCTGGAGCT
GGAGTGCTTGGGCAGAAGTTGTCTGTGAAGCTGTCTGAGTGGCCACCAAC
TGTGGAACTTTGATACTTCTGATTAAGACCTGAGATCACTGGGTCAGGGT
TCCTTGNNGTTCCTNCCTAGCCCCCACTTTTATATTATATTAAGTTTTAC
ATTTATTTTTAAAAAAAATATAAGAATAATTATTATTATTTATTATTATT
ATTTATTTATTTTGGTTTTTTGAGACAGGCTTTCTCTATGTAGCCCTGGC
TGTCCAGGAACTCACTTTGCAAAACAGACTGGTCAAAAACTCAGAGATCT
GCCTGCCTCTGCCTACTGAGTGTTGGGATTAAAGATGTGCACCACCACAC
CAAGCAACTAATTTTTTAATGTGCAAAAATGTTTACCTACATGTAAGTCT
CTGTACCTCCTATTTGCCTTGTGCCTAAGGAGACAAGGCATTGTATTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATGAACAGGACAGACAGCAGCAGCAACCCAGACCCTATTATCC
CAACAGCTTCGTGGCAGCCCCAGATGCCAGTGGTACCCATAAGCATCCGT
GCAGACAGGATCGCCCCTCCAACTCCTTTGACATGCCTGTTGGCCCTTGG
CATGTGGAGGCATCGTCTGGGCCACTTTCCCATGTGCAAGGCCCCACAGA
GGCCACCAGGGACTTCAGCATTGTCCTGCCCAGAAAGCTTCCACTTGGGT
CATTAATAACAGTGTATTTTATTAAAGGAAAGCGGTCTTTAAATAGTTCG
CCGNTTCATGCCCCACAACTTGGACGGGAGTCATTATTTTTGCCGCTCCA
TCACAAAAAAAATACTGTCTCCTCTGTCTTCCACAGAACTCACGTTTGAT
CTCCTGCCTGGGCTGCTTTCTTCTGTTGGCTCAGGGTCCATGGGGAGCGA
ACTATTGTGACCACGGTGGGAAGGATGGGGAAACCCTTTGAAATGGCCTC
TGGTCTGAGAGCCGCTATGGCAAGGCGGCGTATGGGAACTTCTGAGAGGT
GTCTTCTGGAATGAGGACTCCATGGCGGGTTCTTACCATGCCAGATGATG
GATACTTGTTTGTAAAATGCTTGTCAACGGGTAGTGTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l11.b1 MSMg01no320_l11.b1 CHROMAT_FILE:
MSMg01no320_l11.b1 PHD_FILE: MSMg01no320_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:17 2005
         (226 letters)



>mm_chr2_93232273_93232898
          Length = 626

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   catgcttgtggcttgggtgtcagggttatactaacttcagcaccgtgtgctgcggggtcg 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catgcctgtggcttgggtgtcagggttatactaacttcagcaccgtgtgctgcggggtcg 263

                                                                       
Query: 64  cctcttctattctgacctctttaatgtgctaagtgtgctatgtaacattggatcacctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctcttctattctgacctctttaatgtgctaagtgtgctatgtaacattggatcacctgg 323

                                                                       
Query: 124 agctggagtgcttgggcagaagttgtctgtgaagctgtctgagtggccaccaactgtgga 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 agctggagtgcttgggcagaagttgtctttgaagctgtctgagtggccaccaactgtgga 383

                                                      
Query: 184 actttgatacttctgattaagacctgagatcactgggtcaggg 226
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 actttgaaacttctgattaagacctgagatcactgggtcaggg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_l11.g1 MSMg01no320_l11.g1 CHROMAT_FILE:
MSMg01no320_l11.g1 PHD_FILE: MSMg01no320_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:17 2005
         (281 letters)



>mm_chr2_93403720_93404400
          Length = 681

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaacaggacagacagcagcagcaacccagaccctattatcccaacagcttcgtggcag 60
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 478 atgaacaggacagacagcagcagcaacccagaccctattagcccaagagcttcgtggcag 419

                                                                       
Query: 61  ccccagatgccagtggtacccataagcatccgtgcagacaggatcgcccctccaactcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccccagatgccagtggtacccataagcatccgtgcagacaggatcgcccctccaactcct 359

                                                                       
Query: 121 ttgacatgcctgttggcccttggcatgtggaggcatcgtctgggccactttcccatgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgacatgcctgttggcccttggcatgtggaggcatcgtctgggccactttcccatgtgc 299

                                                                       
Query: 181 aaggccccacagaggccaccagggacttcagcattgtcctgcccagaaagcttccacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaggccccacagaggccaccagggacttcagcattgtcctgcccagaaagcttccacttg 239

                                                 
Query: 241 ggtcattaataacagtgtattttattaaaggaaagcgg 278
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 238 ggtcattaataacagtgcattttattaaaggaaagcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)