BAC Information

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BAC

Clone NameMSMg01-321C12
Chromosome2 (Build37)
Map Location 143,517,709 - 143,517,952
singlet/doubletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321C12.T7 (MSMg01no321_c12.b1)MSMg01-321C12.TJ (MSMg01no321_c12.g1)
ACCAG440202AG440203
length833731
length of high quality
(start - end)
96 (70 - 165)248 (69 - 316)
definitionCHROMAT_FILE: MSMg01no321_c12.b1 PHD_FILE: MSMg01no321_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:50 2005CHROMAT_FILE: MSMg01no321_c12.g1 PHD_FILE: MSMg01no321_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGTTCCTATAGTCAGTGTGATGCTTGTCTATAATTATTCTCTCTT
CTCTCTCTTCCTCCTCCTCCTCCTTACTTCCCTCCCCCAACCCCCACTCT
GTGTGTGTGTGTGTGGAGCATGTGTGTATGTGTGTGCTCATGTTTTGTCT
TATTGAAGTATTACCTTTGCCTTACAGATGCCTTTCGGCTTCGTGTCTTG
TCTTTCAACTATTGGTAATCCTATAACCTTACCCACTGTCAGTGCACCCT
AAGAGGTTGTGTTTTTTTTTTCTTCGCGAGCAACACAAACTCCAAAGGAC
ACATTTTTTATATTTTCCCCCCCCCCCCCCTATGTTATAGATGTGTTAAT
CCCATTTGGATATTGCCCCCCCCCACAAAAAAAAAAAAAATAAGTTTCCG
GCGTGCCATTTAACTTACATGCCATACATTGCTATTTACCATTCATACAC
ACCCCCACTTGAATATTGCTGCCCCACACCATTTTTTTTTTTTGTTATTT
CCTCCATAACTCTATATTTTTCCCTACTTTTATTTTACTTCTATCCCTTA
TTCCTTCTATTTCGAATCCGTGCAACACCTCATTTATCCCCTTCCTTTTA
TATATTCTTATTCCCTCGCTTCACACAAATTTTTAACCCATTTATTTTTC
CACCAAAATTTTTTCTTCTATTTATCTCATTACTATCTCCATTTTTCTAT
TTGGTAATCCATTCCAATTTCTCTTTACTTTTATTTTAATTATCTCTATT
ACACCCTCCTTAATACCCTTTAATCTTTTATTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCACGAGAAATTCACTGTCCCTCAATTAAAATTCCTAATTT
CTCTACTGTTTTGGTCACTTCTGCTACAGAACAAACCACCAAGAATAACT
TTTTTTTTTTTAGTTACTGTGTCTTATAATTCTGTGAGATGATGGACTCT
ACTGCAAAGTTCTGCTGGTGTCTCTAAAGAAAGAAAATAATATGTTCAGT
CAGGGAAGGAGGCTCAGTCAATAAAGCTTTTGTACAAGTGCAAGGACCTG
AGTCCCCATCCCTATTTCCCGTGTGAAAGCTGAGTGCAGCAGTGCACACC
TGTCACTCCAGCACTGACGATCAAGGTCAGGCTGCATATACTGGCAGATC
CCTGGAGCCCCCCGCCAGGTCAGCCTCACTGAATCAGTGAGGGTAGGAAC
AGTGAGAGGTCTTGCCTCATATATCAAGGCAGAGAGCAACTGAGGAACAC
ATCTGATATCTCCCTCTGCCCTCTACATGCATAAGGACACATGTGCAACA
CACACACACCACAGAACATGTGCCATTTTATTCTACCCTAATATATATTC
TTTTTTTCCTCACCTTTAACCCTTCATCTACCACGCTATTACTTCTTTCC
TAACCTTTCTTTCACTGCTCCAACAATGTCTTTCTATCTTTACTACTCAA
CCAACAATATTTTCTTTCACATTTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_c12.g1 MSMg01no321_c12.g1 CHROMAT_FILE:
MSMg01no321_c12.g1 PHD_FILE: MSMg01no321_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:50 2005
         (248 letters)



>mm_chr2_143517509_143518154
          Length = 646

 Score =  418 bits (216), Expect = e-121
 Identities = 238/246 (96%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactgtccctcaattaaaattcctaatttctctactgttttggtcacttctgctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcactgtccctcaattaaaattcctaatttctctactgttttggtcacttctgctaca 260

                                                                       
Query: 61  gaacaaaccaccaagaataacttttttttttttagttactgtgtcttataattctgtgag 120
           |||||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 261 gaacaaaccacctagaataaccttttttttt--agttactgtgtcttataattctgtgag 318

                                                                       
Query: 121 atgatggactctactgcaaagttctgctggtgtctctaaagaaagaaaataatatgttca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 atgatggactctactggaaagttctgctggtgtctctaaagaaagaaaagaatatgttca 378

                                                                       
Query: 181 gtcagggaaggaggctcagtcaataaagcttttgtacaagtgcaaggacctgagtcccca 240
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 379 gtcagggaaggaggctcagtcaataaagcttttgtacaagtataaggacctgagtcccca 438

                 
Query: 241 tcccta 246
           ||||||
Sbjct: 439 tcccta 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 646
Length adjustment: 9
Effective length of query: 239
Effective length of database: 637
Effective search space:   152243
Effective search space used:   152243
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)