BAC Information

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BAC

Clone NameMSMg01-321L15
Chromosome2 (Build37)
Map Location 128,712,414 - 128,713,057
singlet/doubletsinglet
Overlap gene1600015H20Rik
Upstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b
Downstream geneZc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321L15.T7 (MSMg01no321_l15.b1)MSMg01-321L15.TJ (MSMg01no321_l15.g1)
ACCAG440620AG440621
length727733
length of high quality
(start - end)
639 (71 - 709)640 (77 - 716)
definitionCHROMAT_FILE: MSMg01no321_l15.b1 PHD_FILE: MSMg01no321_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:32 2005CHROMAT_FILE: MSMg01no321_l15.g1 PHD_FILE: MSMg01no321_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAGGAGTCCGAGAAATGGCTCAGTGGTTAAGAGCATTGGCTGC
TCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAATCACATGGTGGCTCACA
ACCATCTGTAATGGGATCCGATGCCCTCTTCTGATGTGTCTGAAGATAGC
TACAGCATACTTATATATAATAAATAAATAAATCTTTGAAAAAAGTTTAA
ATTAATAAAAATAGAATTCAACATATAAAAATATAGAAGAAAGATAACCC
AAAACTCCTGTAATTTTCACAAAGTAAATTTCTTAATGTCATAAAATATC
TAATTGAAATTAAAATTTCCCTATTCTCTTACATATTTTTAACACTGTTT
GCCTTGGAGCCCAGATCATCACCACCACATCACCTGGCTGTCCTGTCATT
TACATCTTGGGGAATGTCACTTGTCCTCCTACTGAGGTTCTTTGGTTGAC
TGTTCAAGAAAAATACAGGGCCAGTTCTCTGAGCTCACACATTGTTGAAA
CAATCTGTTAGAGGGCAGCTTGATGGGTATAAAATGCCCATCTCTCCTTT
AACTCCCCTGACTCCCTTAGATGCTATGCATCTGTTTACAGATGTGGACT
ACCACACCCAGTCATATGCAGTGCTGAGGACCAAGCCCAGATCCTGATGC
ACACTAGGCCAGCATTCTACCAACTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGACTTGGTTCAAATAATTTAAG
GAAGAAAGTCTTTAGAGATGGTCTTAGTTGATAGAAAGATGTAATAAAGT
TAGAATCAAGAATAGAATGTGAGGGGTTGGGGATTTAGCTCAGTGGTAGA
GCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCTCAGCTCTGGAA
AAAAAAAAAAAATAGAATGTGGGCCAGGCAGTAGTGGTGCAGGCCTTTAA
TCCCAGCACTTGGGAGGCAGAGGCAGGCAAATTTCTGAGTTCAAAGCCAG
CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACCTGACTCAA
ACAAACAAACAAACAAACAACCCCCCAACCATGTGCCCACTCCTCAGAAT
CATACAATGAACTTTCATAATTAAACTAAAAAGAAAAATAGACTTGAGAC
AAATTTGTGTTCAAGAAAAACCATTTAGGTCGAAGGACAAAGTCATAGGT
CTGTACTATGATAAGGCAAGTCGGTGTAAAAACTTTCCCTTTGAACTTAG
AATGAATATATTATAATGAAACACTGCTTTGAACTTACTATCAACATCCT
TCTGTAACTCCCATTTTATGTAATGTAGCAGTGAGTTTATCTACACCACT
ATGTGCTCCTGGCAGGTCATACTCTTCCAGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_l15.b1 MSMg01no321_l15.b1 CHROMAT_FILE:
MSMg01no321_l15.b1 PHD_FILE: MSMg01no321_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:32 2005
         (639 letters)



>mm_chr2_128712218_128713257
          Length = 1040

 Score = 1133 bits (586), Expect = 0.0
 Identities = 629/644 (97%), Gaps = 5/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggctcagtggttaagagcattggctgctcttccagaggtcctgagttcaaatcccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aatggctcagtggttaagagcattggctgctcttccagaggtcctgagttcaaatcccag 256

                                                                       
Query: 61  caatcacatggtggctcacaaccatctgtaatgggatccgatgccctcttctgatgtgtc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 257 caaccacatggtggctcacaaccatctgtaatgggatccgatgccctcttctggtgtgtc 316

                                                                       
Query: 121 tgaagatagctacagcatacttata-ta--taa-taaataaataaatctttgaaaaaagt 176
           |||||| |||||||||||||||||| ||  ||| ||||||||||||||||||||||||||
Sbjct: 317 tgaagacagctacagcatacttataataaataaataaataaataaatctttgaaaaaagt 376

                                                                       
Query: 177 ttaaattaataaaaatagaattcaacatataaaaatatagaagaaagataacccaaaact 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttaaattaataaaaatagaattcaacatataaaaatatagaagaaagataacccaaaact 436

                                                                       
Query: 237 cctgtaattttcacaaagtaaatttcttaatgtcataaaatatctaattgaaattaaaat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cctgtaattttcacaaagtaaatttcttaatgtcataaaatatctaattgaaattaaaat 496

                                                                       
Query: 297 ttccctattctcttacatatttttaacactgtttgccttggagcccagatcatcaccacc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 497 ttccctattctcttacatatttttaacactgtttgccttggagcccagatcatcaccagg 556

                                                                       
Query: 357 acatcacctggctgtcctgtcatttacatcttggggaatgtcacttgtcctcctactgag 416
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acatcacctggctgtcctgtcgtttacatcttggggaatgtcacttgtcctcctactgag 616

                                                                       
Query: 417 gttctttggttgactgttcaagaaaaatacagggccagttctctgagctcacacattgtt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gttctttggttgactgttcaagaaaaatacagggccagttctctgagctcacacattgtt 676

                                                                       
Query: 477 gaaacaatctgttagagggcagcttgat-gggtataaaatgcccatctctcctttaactc 535
           |||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||
Sbjct: 677 gaaacaatctgttagagggcagcttgatcgggtatgatatgcccatctcccctttaactc 736

                                                                       
Query: 536 ccctgactcccttagatgctatgcatctgtttacagatgtggactaccacacccagtcat 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccctgactcccttagatgctatgcatctgtttacagatgtggactaccacacccagtcat 796

                                                       
Query: 596 atgcagtgctgaggaccaagcccagatcctgatgcacactaggc 639
           ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 797 atgcagtgctgaggaccaagcccagatcctgatgcacgctaggc 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space:   647870
Effective search space used:   647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)