BAC Information

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BAC

Clone NameMSMg01-321N05
Chromosome2 (Build37)
Map Location 88,526,233 - 88,526,426
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195
Downstream geneOlfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321N05.T7 (MSMg01no321_n05.b1)MSMg01-321N05.TJ (MSMg01no321_n05.g1)
ACCAG440692AG440693
length727730
length of high quality
(start - end)		49 (252 - 300)194 (129 - 322)
definitionCHROMAT_FILE: MSMg01no321_n05.b1 PHD_FILE: MSMg01no321_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:39 2005CHROMAT_FILE: MSMg01no321_n05.g1 PHD_FILE: MSMg01no321_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTAAATTGCGGCGCTAAACGACTCACTATATTCGGGAACCGACGGAA
NNCNNNGNTTTAACGGNACCCAGNGNAAANAGANGGANGNNANNTNCNGG
AGNCCANCNNCNTGAGNNCCCANANANANNGGANANGAGCCCCCNANCNG
AANNAGGANNGANAAAAANNCNTNCNGAANCNGCNGCNGACCNNNNNGNC
NNANNGACAGNGCCANCTCCCNTACAGAAGCNAGGAAACCCAATGATTTC
TCATTTGTCAATTCTTGATCTTACAGCACAAGTCATTGCTGTTTTGTTCA
GGAAAAACTTCTTTTTTTTTTTANCAACAAGGCNNNCCCCCACAAGCAAC
GCGATTTTTTTCCCCCCCCCCGCCCCCATGTGGAGTTCCTTTATCCACTT
ACACTTGACTTTCCCCCACCAAATTATAATGCACCTATTTGCACCTCTTC
AATTCGATTATCAGCATTTATATCATCACCATTTGTTGAAAATGCTATCC
TTCTTCCCATATGAATGATACTTAGTTCCCTTTGACAGCTGCCTTACTTA
TGTTGTTTTCTTTTCGTCTTCCCTTTTCCCCCCCTATCGACCACCCTGAA
TGTCGCTGTTATTCTTCTCCCGAATCTTTACATTTCCCCTTGCCCCGCTT
TTTTTTTTTGCTTACCCCGCACTCTGCTTTCCTCACCTTGTTCTTTCTCC
CGCGCATATTACTTTTTTTCCGCCCCT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTCAGAAATTCTAGGAAAATATCTTTATAATCTGA
ATGACATCAACAATATTAGATAAGCCTCAGTGCATTCGAAATGTAATACA
GAATATTTTACTAGAAACACTTGAGAACTTTTATATTACAAAAGATATTG
AATTTGTGGTTAGGAGTGGTAAATAATGGATATGTATAGATTTTAAGTTC
TCTATGTATAGAAAGATTATTGACTGAAGCTTTAAGATAAATATAGTATG
AAAAGAAAAAGGATCAAGTTAGTAATATAAGAGTGACTAAACCAGTATTA
AATACTTGATGAATATTTTTTATTTTACCCCCCATGAAATATGAATCTAT
TAATTTAATTTTATTTTTGCCCCCCCCCCAAGAAATTTATGAATTATTAT
AGAAAATATACTCATTATAAACATTCATAGTATAATGATTGATTATAAAA
TTACCCAGAGTTATATGTTTAATTAATTGATCAACATTATGTTATATATA
ACGGAAATGATTTTTTCCACATTATTTGACCTCGAAAGATCTCCAGGTCC
TCAGGATAGTTATTAATTCTATGCAACATTTTTATATATAGAAAACATTA
ATTATAACATTGAAACTTAGTTATCAATAATATGTTGTCCTCTTGTTTTG
GAATTTTAACCATGATAATATATTGCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_n05.g1 MSMg01no321_n05.g1 CHROMAT_FILE:
MSMg01no321_n05.g1 PHD_FILE: MSMg01no321_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:39 2005
         (194 letters)



>mm_chr2_88526033_88526626
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcattcgaaatgtaatacagaatattttactagaaacacttgagaacttttatatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agtgcattcgaaatgtaatacagaatattttactagaaacacttgagaacttttatatta 335

                                                                       
Query: 61  caaaagatattgaatttgtggttaggagtggtaaataatggatatgtatagattttaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caaaagatattgaatttgtggttaggagtggtaaataatggatatgtatagattttaagt 275

                                                                       
Query: 121 tctctatgtatagaaagattattgactgaagctttaagataaatatagtatgaaaagaaa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctctatgtatagaaagattcttgactgaagctttaagataaatatagtatgaaaagaaa 215

                         
Query: 181 aaggatcaagttag 194
           ||||||||||||||
Sbjct: 214 aaggatcaagttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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