Query= MSMg01no322_i17.b1 MSMg01no322_i17.b1 CHROMAT_FILE:
MSMg01no322_i17.b1 PHD_FILE: MSMg01no322_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:32 2005
(486 letters)
>mm_chr2_28445135_28446020
Length = 886
Score = 814 bits (421), Expect = 0.0
Identities = 466/489 (95%), Gaps = 16/489 (3%)
Strand = Plus / Minus
Query: 2 ggaattctttaagctg--tacgaaacgctctatatcggctggagatgcagctcagtggtt 59
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggaattctttaagctgatt--gaaacgctctatatcggctggagatgcagctcagtggtt 544
Query: 60 aaggacccaggttcaattccaagcacctacatggtggctcacaaccatttgtacctccag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaggacccaggttcaattccaagcacctacatggtggctcacaaccatttgtacctccag 484
Query: 120 tcccaggggatttgatgacctcttcatttttacagtatttgtctttaatggagcaaagat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcccaggggatttgatgacctcttcatttttacagtatttgtctttaatggagcaaagat 424
Query: 180 tcatattatgacttataagtagtcactaaaaatgcatatattagaggaaacatagaacat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcatattatgacttataagtagtcactaaaaatgcatatattagaggaaacatagaacat 364
Query: 240 aaaatgtaaatagtataggggggctggagagatggttctgttgttaataacacttgctgc 299
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 363 aaaatgtaaatagtataggggggctggagagatggctctgctgttaataacacttgctgc 304
Query: 300 tcttgcaaaggacctgggtttggtcccagaagccacatggcagctcacaaccacctgtaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcttgcaaaggacctgggtttggtcccagaagccacatggcagctcacaaccacctgtaa 244
Query: 360 ctcctttcaaggcccacctgactttttggatcttctgggcaccttcacttacacacacac 419
|||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct: 243 ctcctttcaagggtgatctgactttttggatcttctaggcaccttcactt---------- 194
Query: 420 acacacacacacacacacacacacacacacacacacacacacacacac--gcgcgtgcgc 477
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 193 acacacacacacacacacacacacacacacacacacacacacacacacgtgcgcgtgcgc 134
Query: 478 atataatta 486
|||||||||
Sbjct: 133 atataatta 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_i17.g1 MSMg01no322_i17.g1 CHROMAT_FILE:
MSMg01no322_i17.g1 PHD_FILE: MSMg01no322_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:32 2005
(656 letters)
>mm_chr2_28270830_28271885
Length = 1056
Score = 1193 bits (617), Expect = 0.0
Identities = 644/653 (98%)
Strand = Plus / Plus
Query: 1 tctgcttagtgacccagtttctcaagggggaggggtagggggttccgtgtcaagttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcttagtgacccagtttctcaagggggaggggtagggggttccgtgtcaagttggaa 260
Query: 61 caaattaaaatacatttgtctttcattcggaaggagtccagcacagcaggagagccaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaattaaaatacatttgtctttcattcggaaggagtccagcacagcaggagagccaggc 320
Query: 121 acggcctcattccagcatgcctagtgccaagtcaatttgcaaagagaagtgtacacatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acggcctcattccagcatgcctagtgccaagtcaatttgcaaagagaagtgtacacatgg 380
Query: 181 cttgggggcagtgtggtaggcccttgggggtggggctatggctcatcccaaggccactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgggggcagtgtggtaggcccttgggggtggggctatggctcatcccaaggccactgg 440
Query: 241 cagtttgtcttactctgtccaatatgatgctgaccggtgcttgtgggtgaagctccccac 300
||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtttgccatactctgtccaatgtgatgctgaccggtgcttgtgggtgaagctccccac 500
Query: 301 ctccccagagtgcttcttcggggctgatagggatgacagcctgccccactcagcacactg 360
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 caccccagagtgcttcttcggggctgatagggatgacagcctgccccggtcagcacactg 560
Query: 361 tatcagagtcccaagtgtcaccgataatcataggaacaacaacaatatcacttacatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatcagagtcccaagtgtcaccgataatcataggaacaacaacaatatcacttacatttg 620
Query: 421 ttggctgctatgtgtgggcactgggccaagccctgcctgtggacaggtcacaggcagatg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggctgctatgtgtgggcactgggccaagccctgcctgtggacaggtcacaggcagata 680
Query: 481 agaacccagggacacagcaagagctggggatcaacttcatccagtctgtcaacaaacact 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaacccagggacacagcaagaactggggatcaacttcatccagtctgtcaacaaacact 740
Query: 541 tctcttttcctttaaaatctttttcatacagtctattttgatgttttccctctcttagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctcttttcctttaaaatctttttcatacagtctattttgatgttttccctctcttagct 800
Query: 601 cctcccagattctatccacccatctttatattctctctctctctctctctctc 653
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 cctcccagattctatccacccatctttatattctctctctctctccctctctc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
