BAC Information

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BAC

Clone NameMSMg01-322L01
Chromosome2 (Build37)
Map Location 11,353,565 - 11,354,007
singlet/doubletsinglet
Overlap genenone
Upstream geneSfmbt2, LOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211
Downstream genePfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322L01.T7 (MSMg01no322_l01.b1)MSMg01-322L01.TJ (MSMg01no322_l01.g1)
ACCAG441316AG441317
length748807
length of high quality
(start - end)
321 (44 - 364)442 (74 - 515)
definitionCHROMAT_FILE: MSMg01no322_l01.b1 PHD_FILE: MSMg01no322_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:42 2005CHROMAT_FILE: MSMg01no322_l01.g1 PHD_FILE: MSMg01no322_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTACATCTTTTCCATTGAGCATTTTGGGCTGGCGAGATAGCTCAGCA
GGTAAGAGCACTGACTGTTCTTCAGATGGTCCTCATCAACCACATGGTGT
CTCACAACCACCCATAATGAGATCTGACGTCCTCTTCTGGTGCATCTGAA
GATAGCTACAGTGTACTTATGTATAATAATAAATAAATCTTGGGGCGGGA
CTGAGTGAGCCAGGCCAATCTGACCAAGCAGAGGTCCTAAACATTCAATT
CCCAACAACCACATGAAGGTTCATAACCATCTGTTCAGTTACAGTGTACC
CATATCCATTAATTATTTAAATAAATCCCCCCCCACATAAATAAATAAAT
AAATAAATAAATAAATCTCCACCAAGAAGTTGAGCATTTTATTATTTTTG
TTTGAAAATAATAAAGATCAGTATAAAGTAAAAAAACAAACAAACATAAA
TCCATCTAGCTAGAAAAGAAACAAACTGGCAAATACATTTTAGATATGTT
CTCTGCGGCTTTAAAACAAAAGCAGAATCTCTCAATTAAATTATTTTGAT
CCAATAAAATTAGATTTTGTGAGTCTTCACTGTGGGCAATTTCGTTTGCC
TTTTACTTTTTGTTATATACATAAGCATCACACACTGGTGATGAGTGTAT
AATCTGACTTGTTAAGTGGTTTGGAGAAATGGTTCCGTTGCTTAATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATCTCTGAAATTCCAATGCATCTTTTATGAGAGGAAA
CAATTCATCCTGTAATGTACTCTAATCTGTTCTCCATCATCTCCTCACAG
ACAGCCTCAAGCTGGAGGAGGATGATAGAACGGCCTGTATCCTGGCTCAG
GATTGGAAGTGCTTTATAAACAGAAAACGGCCTCAGATTTGTCAATTATG
TGGTGGCAGGAATGCTTTAGAGAGCAGAGAATGGGTCCCCATGCACAGAC
ATTCCCAGAAGCCTATAAGGCTAGGTCAGATGGGAACACAGACTTTTTAC
CACAGGAAACCAGGCCTTGGCCTCAGGAAAGGATCAGAGAAAAACTTCTG
GTCCCCGTTTTAAATATTACCTCTGTTGGCAGCTGCTCAGTCTGCCTTCT
TAGTGCGTGCGTGCGTGCGTGCGTGTGTGCGTGTGTGCGTGTGCGTGTGC
GTGTGCGTGTGCGTGTGCGTGCGTGTGTGTGTGTTGCGTGTGTGTGTTGG
CACAGTTTTTTCTCTTGCTGTCTCCCGCTCTTGATTTCAGCGTTCTAACA
CTCCCTTTCTTGATCTATATAATCACTCCTTTTTCTTCTGCCTCATTTCC
CTCTTTTATCCCTGCCTCCTCATTACTCCCTATTATACTACTTTTCTTTT
TCTCCTTATATACATTCTTTATCTGCCCCTCTACCCTTTTCTCCCTCTAT
TTCTCCCCCCCCTCCTCACTTCTTCTTCTTTCTTTCCTGCCCCCACATCT
TCCTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_l01.g1 MSMg01no322_l01.g1 CHROMAT_FILE:
MSMg01no322_l01.g1 PHD_FILE: MSMg01no322_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:42 2005
         (442 letters)



>mm_chr2_11353365_11354210
          Length = 846

 Score =  764 bits (395), Expect = 0.0
 Identities = 429/443 (96%), Gaps = 6/443 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaatgcatcttttatgagaggaaacaattcatcctgtaatgtactctaatctgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaatgcatcttttatgagaggaaacaattcatcctgtaatgtactctaatctgttct 260

                                                                       
Query: 61  ccatcatctcctcacagacagcctcaagctggaggaggatgatagaacggcctgtatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatcatctcctcacagacagcctcaagctggaggaggatgatagaacggcctgtatcct 320

                                                                       
Query: 121 g----gctcaggattggaagtgctttataaacagaaaacggcctcagatttgtcaattat 176
           |    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gcagggctcaggattggaagtgctttataaacagaaaacggcctcagacttgtcaattat 380

                                                                       
Query: 177 gtggtggcaggaatgctttagagagcagagaatgggtccccatgcacagacattcccaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtggcaggaatgctttagagagcagagaatgggtccccatgcacagacattcccaga 440

                                                                       
Query: 237 agcctataaggctaggtcagatgggaacacagactttttaccacaggaaaccaggccttg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctataaggctaggtcagatgggaacacagactttttaccacaggaaaccaggccttg 500

                                                                       
Query: 297 gcctcaggaaaggatcagagaaaaacttctggtccccgttttaaatattacctctgttgg 356
           |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gcctcaggaaaggatcagggaaaaacttctggtccccgttttaaatattagctctgttgg 560

                                                                       
Query: 357 cagctgctcagtctgccttcttagtgcgtgcgtgcgtgcgtgcgtgtgtgcgtgtgtgcg 416
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 561 cagctgctcagtctgccttcttagtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcg 620

                                  
Query: 417 tg--tgcgtgtgcgtgtgcgtgt 437
           ||  || ||||| ||||| ||||
Sbjct: 621 tgcatgtgtgtgtgtgtgtgtgt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 846
Length adjustment: 10
Effective length of query: 432
Effective length of database: 836
Effective search space:   361152
Effective search space used:   361152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)