BAC Information

Click to search

BAC

Clone NameMSMg01-323I04
Chromosome2 (Build37)
Map Location 160,484,270 - 160,484,868
singlet/doubletsinglet
Overlap geneTop1
Upstream geneLOC100043689, Gm826, Mafb, LOC100043892
Downstream genePlcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323I04.T7 (MSMg01no323_i04.b1)MSMg01-323I04.TJ (MSMg01no323_i04.g1)
ACCAG441913
length1,1211,264
length of high quality
(start - end)
---594 (139 - 732)
definitionCHROMAT_FILE: MSMg01no323_i04.b1 PHD_FILE: MSMg01no323_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:08 2005CHROMAT_FILE: MSMg01no323_i04.g1 PHD_FILE: MSMg01no323_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGCCTNNNNNNNGGCAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGACC
GCGGTAACCAGGCCAAGCTTAAAGAAACACGGGGAAAGGGCCCAAAAAGA
AAAATAACCCTTTTTTAATTT
NCCCTTTCATNNNNNAGCGATGCGATGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGGGCTCTTTTTTTGG
NTTTTCGAGACAGGGTTTTCCTTTATAGCCCTGCCCGGCCTGGAACTCAC
TTTGTAGTCCAGGCTGGCCTGGAACTCAGAGATCCTCCTGACTCTGCCTC
CCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCTCAGAGTGAA
TTCTTTTTTCCTCTCCTTTGCAATTTCAGAATTCTTAAGAAGAGATTTTA
GTCAGGAACTCCTTGTGTCTTCTGACTTAGAAAGATTTATTAATTATGTT
CTAGAATTTTGAATTCTCAATGAGAACTATTGTAAAATAACTGCTTTTGT
ATAGATTTACTTTTTTTAGCCACTGTTAAGATGGACCTAACACTGAGAGT
AAACTAACACTTATTAAAGTATGAATTGAGACAGTTGGAAAGAGGGAGTG
GAATTTTTTCACTGTTCTTAACTTCCAATGACAATAAGCTTTCAGGCTTG
TTAGTTCCTGGGGAGATTCATGGAGAGTCCTAGTACATGGGCACACTTGG
ATGTTGGGCTTTATCACCAGAGGCCAGTTTGTTATCTGTCCTAAACAAAA
ACAGAATTTTAAAGCATTAGAAAGTACAAGTGCATAATATTAAGTATGTT
GATTTTGTATAAACTCCAGCTTTGGGGATGTGGTTCTAAGACCAAGATGC
AGGGTTTCAGTAAGCTTTATAATAATGCCTTCTTTTTTCTTTTGGCTTTC
TTTCTTCCTTTTTTTTTTTTTTTTTTGGGTTCTTTTTCGAAACAGGGCTT
CTCTGTGTAGCCATGGCTGTCCTGGAACTCCCTCTGTAAAACAGGTTGGC
CTCCCACTCAAAAATCTGCCTGGCTCTGCCCCCCAAGGGCTGGGATTAAA
GGGGGGCGCCATCCCCCCCAAAATTTTTTGGTTTTTAGGAAAATCCAGAG
GCCTTTTTTTTTTGGGGGGGAAGGGGTGTCTCTTATCATCTACTGCTTTA
GCTCTACTTCCTTCTTTTTTAGTTTTTTACTGCTTGTCGCCTTTTATCAT
ATCACTTTAATCATTTCACTAACTCTCCTTCCTTCTCTCATCTATTCTGT
ACTATTTATAACGTTTTATTCAATTTTCCTTATCTCTATCTTTTTCCTCT
CTTTATTTACATTTGAGACATGTGCTTACCTCCACTTACTTTATCCCTTT
CTATGATCATATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_i04.g1 MSMg01no323_i04.g1 CHROMAT_FILE:
MSMg01no323_i04.g1 PHD_FILE: MSMg01no323_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:08 2005
         (594 letters)



>mm_chr2_160484070_160485068
          Length = 999

 Score = 1085 bits (561), Expect = 0.0
 Identities = 588/599 (98%), Gaps = 5/599 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggaactcactttgtagtccaggctggcctggaactcagagatcctcctgactctgcc 60
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggaactcactctgtagaccaggctggcctggaactcagagatcctcctgactctgcc 260

                                                                       
Query: 61  tcccgagtgctgggattaaaggcgtgcgccaccacacccggctcagagtgaattcttttt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccgagtgctgggattaaaggtgtgcgccaccacacccggctcagagtgaattcttttt 320

                                                                       
Query: 121 tcctctcctttgcaatttcagaattcttaagaagagattttagtcaggaactccttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctctcctttgcaatttcagaattcttaagaagagattttagtcaggaactccttgtgt 380

                                                                       
Query: 181 cttctgacttagaaagatttattaattatgttctagaattttgaattctcaatgagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgacttagaaagatttattaattatgttctagaattttgaattctcaatgagaact 440

                                                                       
Query: 241 attgtaaaataactgcttttgtatagatttactttttttagccactgttaagatggacct 300
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 441 attgtaaaataactgcttttgtatagatttacttaaattagccactgttaagatggacct 500

                                                                       
Query: 301 aacactgagagtaaactaacactt--attaaagtatgaattgagacagttggaaagaggg 358
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 501 aacactgagagtaaactaacacttttattaaagtatgaattgagacagttggaaagaggg 560

                                                                       
Query: 359 agtggaattttttcactgttcttaacttccaatgacaataagctttcaggcttgttagtt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtggaattttttcactgttcttaacttccaatgacaataagctttcaggcttgttagtt 620

                                                                       
Query: 419 cctgggg---agattcatggagagtcctagtacatgggcacacttggatgttgggcttta 475
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgggggggagattcatggagagtcctagtacatgggcacacttggatgttgggcttta 680

                                                                       
Query: 476 tcaccagaggccagtttgttatctgtcctaaacaaaaacagaattttaaagcattagaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaccagaggccagtttgttatctgtcctaaacaaaaacagaattttaaagcattagaaa 740

                                                                      
Query: 536 gtacaagtgcataatattaagtatgttgattttgtataaactccagctttggggatgtg 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtacaagtgcataatattaagtatgttgattttgtataaactccagctttggggatgtg 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 999
Length adjustment: 10
Effective length of query: 584
Effective length of database: 989
Effective search space:   577576
Effective search space used:   577576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)