BAC Information

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BAC

Clone NameMSMg01-323L04
Chromosome2 (Build37)
Map Location 99,345,134 - 99,345,754
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702, LOC100042907, LOC241572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323L04.T7 (MSMg01no323_l04.b1)MSMg01-323L04.TJ (MSMg01no323_l04.g1)
ACCAG442047AG442048
length1,2491,235
length of high quality
(start - end)
690 (92 - 781)694 (95 - 788)
definitionCHROMAT_FILE: MSMg01no323_l04.b1 PHD_FILE: MSMg01no323_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:32 2005CHROMAT_FILE: MSMg01no323_l04.g1 PHD_FILE: MSMg01no323_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCGGTCTANNNNNAGTATTGGGCGCTAAGACTCACTAAGGGAGAGGA
TCCGCGGAATTCTATGGAAGAGCTGGCACATATAAGCCGGCCCTGAACTG
GATAGGAACTCCACAGGACGTCAACTACCCTGGACCCTTTGGTGCTCTCA
GAGACTGAACTACCAACCAAAGATCATACAGGGATTAAACCTAGGCCCCC
AACACATATGCAGTAGATGTACAGTTTAGTCTTCATGTGGGTTCTGAACA
ATTGGAATTTCTGTCTCAAATGGTGTTGCCTGTAGGTGGAGTAAGTTTTT
CTAGCAGGGCTGCCTTGCCTGGCCTCTGTGGGAGAGGATGTGCTTAGTTC
TGCAGAGACCAACAACAAACAAAGCACCAAATCTGAAAAGAAAAGAAGAC
TCTAGGACACAAATGGCAGTTCTAAGAACCTATTGAAGAGGACAAGGTTA
TTCTCTGGAGGAATGGGACAGCTTGATAAATTATTACGGGTCTTAATATA
GTTTAGGATCAGTGTATATTCACAGTGTTTATAGGCCTTCTACTCATATA
TATGAATAAATGGGTCTGGACCAATATTGACCAAAGCTTGGAGCAGGAAA
AACTAAAAGCATTTTCCTGTAAAAAAAAGCAAACATGCACTTGGAAGGTA
AAACATCTGCTTGTCAATTAAGCTGGTCATTTTCAGATTATCTTTGACTC
TAAATCCATTTGAAGTATGTTCTCTGACACTGGTCAGAATTGAAAATGGT
GTGGGAAAAAAAGGTCATATATATGTTCCTGGTTTTTCAAAGAAAAAAAA
AATGCTTCAAAAAGGTGAAGGTTACATTTTCAGATGAGGAATGGGGTCAC
TTCAGGTGGCNAGCAATGTTAAATGAACCAGATTTCTTAAAAGGGCAAAT
CTCAGAACAAATATTATTGTCTCAATGTGAAGCTTCCGTTAATTAAACAC
AAGCCTTGAGAAAGAAACTTTATAGGGAAAAACAAAATTTGTCCTTTTAA
GAAGGGGGGAAATTTGTAAAATTGCCCCCAATTATTAACCAAAATTATTC
CCTACCCCTGGAAAAAATTTGCGGACCTGAAAATAAAACAAAAGCTTCCT
TATCCGGAATTTCTCCCCCACAATAAAAAGAAAATCCGTTGGGCCCCCCC
CCCCCAAAAAAAAACCCCCCCTGTGAAGCTTTAGGGGTATTTGGTCGGGG
GGGGCCCCAACATCAAAAAAAAAATACCCAAGCTAATGTTCACATCGTT
NNNCCCTTTTTTTNNNNNATGATGCNAGGCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTACTAGGCCCTTTTATTT
GCATTTCTCTGATGACTAAAGACTTAAAACTTTTATCCAAGTGCTTCTCA
GTCATTTGAGATTCTTCTGTTATGAATTCTCTGTTTAGCGTTTACCCCAT
TTTAATTGTGGGGGTTTTTTAGGTTAACTTTTTGAGATTTTTATATATTT
TGGAATTAATCCCTTTGTAGGATGTAGGGTTAGTGAAGAGTTTTTCCTGA
TATGTAGGTTGCTGATTTGTCCTATTGGTGGTGTCTTTTGACTTACAGAA
ACTTTTCAGTTTTGTGAGGTCCCACTTATCAATTATTAATCTTAAAGTCT
GAGCCACTAGTGTCATGTTAAGGAAATTTCCTCTTATGCCAGTCAGTTCT
AGACTCTTTCCTACTTTCTCTTGTATTAGATTCAGTGTATCTGGTTTTAT
GTTGAGGTCCTTGATCCACTTGGACTGAAGATCAGTGCAGTGTGATAAAT
ACTGTTATATTTTTATTCTCCTACCTACAAACTGCTAGTTAGACCAGTAT
CATTTGTTTGAAGATGCTTTTTCTTTCACTGTATGGTTTTGGCTTCTTTG
TCAAAGATCAAGTGACCTTATGTGGATGGCATTATTTCTAGGTCTACAAT
TCTACTCCATTAATCTACCTGTTGTTTTCTAACCAATACTGTTTAGTGTT
TATTAATATTGATTTGTAATACAGTCCCAGGTCAGGAGTGGTGATTCCCC
CAGATGTTCTTTTATTGTTGAGAATTGTTTTGGTATTTTGGAATTTTGTT
TATCCCTATGATGCTGAAAATTTCTCTTTCTTCTCTGCGAAAAATGAGGG
AAAATTTTGTTGGGATTGCTTTAAACCCTAAATGGCTGGGGACACATACC
CCCCACATTTTTTTCTTTTTTGGGTATTATAAAAAAGGAGGGTGGCCCAC
CCCCTTCTACCCCTTTATATTTTTTNNATGGAGGAACCACCCCCTTTTTT
TTTCCCTACCTTCGTCAATTTCTCTCCAATCCCTCACCCTTTCGTGTCCC
TTTTTTTTTNTACCTATCCCCTCTCCCTCCCTCCCCAAATNGGCTTCTTC
NTCTTCTCTTTTCAANATTTCTCTCACTACCCCTTTTACCCCCACTTCTT
CATGCNNACTCATCTTANACTACCAACATCACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_l04.b1 MSMg01no323_l04.b1 CHROMAT_FILE:
MSMg01no323_l04.b1 PHD_FILE: MSMg01no323_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:32 2005
         (690 letters)



>mm_chr2_99344665_99345754
          Length = 1090

 Score = 1147 bits (593), Expect = 0.0
 Identities = 614/621 (98%)
 Strand = Plus / Minus

                                                                        
Query: 67   aactaccaaccaaagatcatacagggattaaacctaggcccccaacacatatgcagtaga 126
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 aactaccaaccaaagataatacagggattaaacctaggcccccaacacatatgcagtaga 1031

                                                                        
Query: 127  tgtacagtttagtcttcatgtgggttctgaacaattggaatttctgtctcaaatggtgtt 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tgtacagtttagtcttcatgtgggttctgaacaattggaatttctgtctcaaatggtgtt 971

                                                                        
Query: 187  gcctgtaggtggagtaagtttttctagcagggctgccttgcctggcctctgtgggagagg 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  gcctgtaggtggagtaagtttttctagcagggctgccttgcctggcctctgtgggagagg 911

                                                                        
Query: 247  atgtgcttagttctgcagagaccaacaacaaacaaagcaccaaatctgaaaagaaaagaa 306
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 910  atgtgcttagttctgcagagactaacaacaaacaaagcaccaaatctgaaaagaaaagaa 851

                                                                        
Query: 307  gactctaggacacaaatggcagttctaagaacctattgaagaggacaaggttattctctg 366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  gactctaggacacaaatggcagttctaagaacctattgaagaggacaaggttattctctg 791

                                                                        
Query: 367  gaggaatgggacagcttgataaattattacgggtcttaatatagtttaggatcagtgtat 426
            ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 790  gaggagtgggacagcttgataaattattactggtcttaatatagtttaggatcagtgtat 731

                                                                        
Query: 427  attcacagtgtttataggccttctactcatatatatgaataaatgggtctggaccaatat 486
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 730  attcacagtatttataggccttctactcatatatatgaataaatgggtttggaccaatat 671

                                                                        
Query: 487  tgaccaaagcttggagcaggaaaaactaaaagcattttcctgtaaaaaaaagcaaacatg 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  tgaccaaagcttggagcaggaaaaactaaaagcattttcctgtaaaaaaaagcaaacatg 611

                                                                        
Query: 547  cacttggaaggtaaaacatctgcttgtcaattaagctggtcattttcagattatctttga 606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  cacttggaaggtaaaacatctgcttgtcaattaagctggtcattttcagattatctttga 551

                                                                        
Query: 607  ctctaaatccatttgaagtatgttctctgacactggtcagaattgaaaatggtgtgggaa 666
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  ctctaaatccatttcaagtatgttctctgacactggtcagaattgaaaatggtgtgggaa 491

                                 
Query: 667  aaaaaggtcatatatatgttc 687
            |||||||||||||||||||||
Sbjct: 490  aaaaaggtcatatatatgttc 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)