Query= MSMg01no324_m07.b1 MSMg01no324_m07.b1 CHROMAT_FILE:
MSMg01no324_m07.b1 PHD_FILE: MSMg01no324_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:10 2005
(123 letters)
>mm_chr2_178523380_178523901
Length = 522
Score = 182 bits (94), Expect = 7e-51
Identities = 112/118 (94%), Gaps = 3/118 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaatgtgccacagagcagctgagtgtccattccttggttagcgaaggacat-tc 62
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 204 ggaattcaatgtgtcacagagcagctgagtgtccattacttggttagcgaaggacatat- 262
Query: 63 ctgtaacaagggaggggttgttcacaggcccagtcgatcccgtcntttgagaggcatc 120
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 263 ctgtaacaagggaggggttgttcacaggcccagtcgttcccgtc-tttgagaggcatc 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 522
Length adjustment: 8
Effective length of query: 115
Effective length of database: 514
Effective search space: 59110
Effective search space used: 59110
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no324_m07.g1 MSMg01no324_m07.g1 CHROMAT_FILE:
MSMg01no324_m07.g1 PHD_FILE: MSMg01no324_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:10 2005
(576 letters)
>mm_chr2_178683193_178684167
Length = 975
Score = 994 bits (514), Expect = 0.0
Identities = 562/580 (96%), Gaps = 9/580 (1%)
Strand = Plus / Minus
Query: 1 ctgatggcctggaaggagccaccttgcctcgctgcaccc-ccc-ccttct-ctccccctc 57
||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||
Sbjct: 775 ctgatggcctggaaggagccaccttgcctcgctgcaccctcccaccttctccaccccc-- 718
Query: 58 aaccttcttccttttctctgtccttctctcacccctccttttttctttgcaatgagaaac 117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 --cc-tcttccttttctctgtccttctctcacccctccttttttctttgcaatgagaaac 661
Query: 118 aacacagctaatctgagcatgtcttagccacaggccagggaactggttgaaagaaaccag 177
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 660 aacacagctaatctgagcatgtcttagccacaggccagggaactggttgagagaaaccgg 601
Query: 178 acactctgaggattgccatcagagaaaggcttgaagactcagtg-ttcctaagagccatt 236
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 600 acactctgaggattgccatcagagaaaggcttgaagactcagtgtttcctaagagccatt 541
Query: 237 tgcttctaggggaagggatttgccctgcacgtgattagccagcacagcagccaaggtcag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgcttctaggggaagggatttgccctgcacgtgattagccagcacagcagccaaggtcag 481
Query: 297 tgtcagaaccagcatcctgtgaaggtatcatctgtaagaacaaacccattctgggtgtta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgtcagaaccagcatcctgtgaaggtatcatctgtaagaacaaacccattctgggtgtta 421
Query: 357 aggagagtgagggcctaagcagacatgtgaggcactttggcctcaccctgggccctctta 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 aggagagtgagggcctaagcagacatgtgaggcactttggcctcaccctgggccctctca 361
Query: 417 ggggtaccccataacatgcaggtggttggcacatgctgtcaacctccacttcaatgtcag 476
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 360 ggggtaccccataacatgcaggtggttggcacatgttgtcaacctccacttcaatgtcag 301
Query: 477 cagaggagatactaaaaactgcaaagtatcccagcagccttcaggtcccgccacctgtca 536
||||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 300 cagaggagatattgaaaactgcaaagtatcccagcagccttcaggccccgccgcctgtca 241
Query: 537 ccagatgaccttccacatagagagataatctttcgggaca 576
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ccagatgaccttccacatagagagataatctttcgggaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
