Query= MSMg01no324_n19.b1 MSMg01no324_n19.b1 CHROMAT_FILE:
MSMg01no324_n19.b1 PHD_FILE: MSMg01no324_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:17 2005
(569 letters)
>mm_chr2_178806762_178807730
Length = 969
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaatagatggccagaaagaagcaaagggtagaagtgggggttgggatgaacccc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatagatgggcagaaagaagcaaagggtagaagtgggggttgggatgaacccc 264
Query: 65 cactgtgagaaaacatggggagaggtacacagtgtcagaatgacctggggaatgagggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactgtgagaaaacatggggagaggtacacagtgtcagaatgacctggggaatgagggaa 324
Query: 125 gaggggaatgtaatcagctgtgcagacaaggaggggctggagtggcccagaccagaacca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggggaatgtaatcagctgtgcagacaaggaggggctggagtggcccagaccagaacca 384
Query: 185 tagacaggctgacctgtcccaagcttggaaaacaaagatgacatttaaaaagctatttgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagacaggctgacctgtcccaagcttggaaaacaaagatgacatttaaaaagctatttgc 444
Query: 245 aaaatgcctcagacatgaacgccaattcccaagctcaactccctgtcccgaattgattgc 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 aaaatgcctcagacatgaacgccaattcccaagcacaactccctgtcccgaattgattgc 504
Query: 305 atctgcccaagagatatggtccatcctgaccctggtgtctgagagcacccctttcaaaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctgcccaagagatatggtccatcctgaccctggtgtctgagagcacccctttcaaaat 564
Query: 365 atgttctttgcaggtgtcatcaaatcagatgacatcctgccagatcgggacttgaacaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgttctttgcaggtgtcatcaaatcagatgacatcctgccagatcgggacttgaacaca 624
Query: 425 atgttctcataaaaaacctagtatccttaccaaaatacacaggtttaggggggactcatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgttctcataaaaaacctagtatccttaccaaaatacacaggtttaggggggactcatt 684
Query: 485 tgggtttagatccccagaacacatctaagacattgggcatatgacagagcacacctgtaa 544
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgagtttagatccccagaacacatctaagacattgggcatatgacagagcacacctgtaa 744
Query: 545 ccccagcaccaggcatgtgggacag 569
|||||||||||||||||||||||||
Sbjct: 745 ccccagcaccaggcatgtgggacag 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_n19.g1 MSMg01no324_n19.g1 CHROMAT_FILE:
MSMg01no324_n19.g1 PHD_FILE: MSMg01no324_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:17 2005
(522 letters)
>mm_chr2_178956339_178957262
Length = 924
Score = 994 bits (514), Expect = 0.0
Identities = 521/524 (99%), Gaps = 2/524 (0%)
Strand = Plus / Minus
Query: 1 caagtagaagctggaaaagttgtttgtgtgctagttttgcttgccatccccccagaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 caagtagaagctggaaaagttgtttgtgtgctagttttgcttgccatccccccagaactt 665
Query: 61 ccagacagtcctgaagaggtgtgctctagcaacacatggcatgtgggtgcccggtgatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ccagacagtcctgaagaggtgtgctctagcaacacatggcatgtgggtgcccggtgatgg 605
Query: 121 aaaatctgcatgatgtagtggacaagtgtcttccaaatgggtcacagagttaccccagtt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaaatctgcatggtgtagtggacaagtgtcttccaaatgggtcacagagttaccccagtt 545
Query: 181 catgacaggccagtaggcttccatttaacacagtgcagagggctcagcaaaacagcttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 catgacaggccagtaggcttccatttaacacagtgcagagggctcagcaaaacagcttca 485
Query: 241 aaccatactaatctaacctgcaagaagcccccacccctgggtttggagtgcagtctggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aaccatactaatctaacctgcaagaagcccccacccctgggtttggagtgcagtctggaa 425
Query: 301 agaacagtcacagggatgaagaagagccccaaatcaattaaaacccagctcctttcccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agaacagtcacagggatgaagaagagccccaaatcaattaaaacccagctcctttcccac 365
Query: 361 ctggatgtctgagtgaggttttaattatgtgtatgtgtgcatgcctgggtgtgcatgcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctggatgtctgagtgaggttttaattatgtgtatgtgtgcatgcctgggtgtgcatgcct 305
Query: 421 gggtgtaggcatacaca--tacacataattaaatatgtgatatgtgagtataggtgccca 478
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggtgtaggcatacacacatacacataattaaatatgtgatatgtgagtataggtgccca 245
Query: 479 aagagtccagaaggggacatggatgcagggagctactgcagtta 522
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagagtccagaaggggacatggatgcagggagctactgcagtta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 924
Length adjustment: 10
Effective length of query: 512
Effective length of database: 914
Effective search space: 467968
Effective search space used: 467968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
