Query= MSMg01no324_p14.b1 MSMg01no324_p14.b1 CHROMAT_FILE:
MSMg01no324_p14.b1 PHD_FILE: MSMg01no324_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:25 2005
(684 letters)
>mm_chr2_158835430_158836513
Length = 1084
Score = 1257 bits (650), Expect = 0.0
Identities = 673/682 (98%), Gaps = 4/682 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccatct--ttcgggtgaagaacattattatgaaaatacagacagtggaaaagc 62
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 794 gaattcaccatctaat--gggtgaagaacactattatgaaaatacagacagtggaaaagc 737
Query: 63 caactcagtactggggtataaaggaaggcacaatcagaaaagggtatatctgagagggtt 122
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 736 caactcagtactggggtataaaggaaggcacaattagaaaagggtatatctgagagggtt 677
Query: 123 cttgatggatgagtaggagttccccaggtagtcagagaggcaaagcactcccagggaaag 182
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cttgatggatgaataggagttccccaggtagtcagagaggcaaagcactcccagggaaag 617
Query: 183 agagaagatgtgaaatgcagtgtctatgaagggcaaagggcctgcacacacaacttacca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agagaagatgtgaaatgcagtgtctatgaagggcaaagggcctgcacacacaacttacca 557
Query: 243 ctgggcagaccctgcttatcttaaaactctttgcacttcccaggggagaatcatgtagcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctgggcagaccctgcttatcttaaaactctttgcacttcccaggggagaatcatgtagcc 497
Query: 303 tccacttcaatgagaaagattaggctctgtgacctgcttgcctctccccacaacaggctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tccacttcaatgagaaagattaggctctgtgacctgcttgcctctccccacaacaggctt 437
Query: 363 aaacaagccagccctgctgaaatcaagagtaatcatgtgacttatcctggccagtgaact 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaacaagccagccctgctgaaatcaagagtaatcatgtgacttatcctggccagtgaact 377
Query: 423 gtaagcagaaagagtgagtgtcacttctaagtagggcttacaagagccaagtcaccattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtaagcagaaagagtgagtgtcacttctaagtagggcttacaagagccaagtcaccattt 317
Query: 483 ctgttgtctgtcctttcttctaggatgaaccaacagtgtctcttggtctcatgtgaggtt 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 316 ctgttgtctgtcctttcttctaggatgaaccaacagtgtctcttggtctcatgtgaggct 257
Query: 543 tcttcatcagtctagatccctcaatgcactccaagcagagaacagctgtactcagcataa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcttcatcagtctagatccctcaatgcactccaagcagagaacagctgtactcagcataa 197
Query: 603 agacacacgttcgatatgaagcaagaagcaaccatctgttcttccaagccactgagattt 662
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agacacacgttcaatatgaagcaagaagcaaccatctgttcttccaagccactgagattt 137
Query: 663 gggagatgtttgctaccacaag 684
||||||||||||||||||||||
Sbjct: 136 gggagatgtttgctaccacaag 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_p14.g1 MSMg01no324_p14.g1 CHROMAT_FILE:
MSMg01no324_p14.g1 PHD_FILE: MSMg01no324_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:25 2005
(642 letters)
>mm_chr2_158675023_158676066
Length = 1044
Score = 1098 bits (568), Expect = 0.0
Identities = 630/664 (94%), Gaps = 23/664 (3%)
Strand = Plus / Plus
Query: 1 ttgtgtctcacaaggactattcgtgatgaccacgagctgcacatccaccctgcctcagtc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttgtgtctcacaaggactattcgtgatgaccacgagctgcacatccaccctgcctcagtt 241
Query: 61 ctctatgcagagaaaccaccccgctggtaagccc--ccccc------------------- 99
|||||||||||||| ||||||||||||||||||| |||||
Sbjct: 242 ctctatgcagagaagccaccccgctggtaagcccctcccccgctggtaagcccctcccct 301
Query: 100 -atgggaagcccctcccctgctgggaagcccctcccctgctgggaagcccctcccccccg 158
||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 302 gatgggaagcccctcccccgctggtaagcccctcccctgctgggaagcccct-ccccccg 360
Query: 159 ctgagcttggccctgctcatctctgggtctccaagcctaggcttgcagtacaggtgctcc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgagcttggccctgctcatctctgggtctccaagcctaggcttgcagtacaggtgctcc 420
Query: 219 ctccacggtgttgacgttggtgtgctgggttgccagggtttgtactcttgtcaagggtcc 278
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctccacgctgttgacgttggtgtgctgggttgccagggtttgtactcttgtcaagggtcc 480
Query: 279 cctaaaggtagagagtcctccagttactgctgagctgccttgcgctgtgctcagtaaaat 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctaaaggtagagagtcctccagttactgctgagctgccttgcgctgtgctcagtaaaat 540
Query: 339 atccttttgaaaaatctccataagtattgatgattacttcctccctcgtcctcccaacaa 398
|||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 541 atccttttgagaaatctctgtaagtattgatgattacttcctcccttgtcctcccaacaa 600
Query: 399 aatacttttgttggtgacagaaggattgtgggttggggccacttgggcagtttgtcttct 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatacttttgttggtgacagaaggattgtgggttggggccacttgggcagtttgtcttct 660
Query: 459 gcaaaaataaaaagtgtgacaaggagcagcaaaggtgctcgctatgaccacagactgagg 518
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 661 gcaaaaataaaaagtgtgacaaggagcagcaaaggtgctcgctgtgaccacagactgagg 720
Query: 519 cttcctgcagcaggcacagcatgtagggatgacttagaacccagctgaagtcttatttac 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cttcctgcagcaggcacagcatgtagggatgacttagaacccagctgaagtcttatttac 780
Query: 579 caggcgaacagattgaagtcccgtaggagaagcttttctgaagggctgtgctattgcaat 638
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 781 caggcgaacagattgaagtcccgtaggagaagcttttctgaagggctgtgctattgcagt 840
Query: 639 gtgt 642
||||
Sbjct: 841 gtgt 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1044
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1034
Effective search space: 653488
Effective search space used: 653488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
