BAC Information

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BAC

Clone NameMSMg01-326C06
Chromosome2 (Build37)
Map Location 74,971,767 - 74,972,432
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
Downstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326C06.T7 (MSMg01no326_c06.b1)MSMg01-326C06.TJ (MSMg01no326_c06.g1)
ACCAG443844AG443845
length725730
length of high quality
(start - end)
669 (45 - 713)---
definitionCHROMAT_FILE: MSMg01no326_c06.b1 PHD_FILE: MSMg01no326_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:47 2005CHROMAT_FILE: MSMg01no326_c06.g1 PHD_FILE: MSMg01no326_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCACATACTGGGGGTGTAGAGGCCCTGCAATAAGATTTTCTGCC
CTTCATTCACCACCTTCATCCTCAGTGTGTTAATTTAATAAACCCTCCGG
AGTTTAGTAGTGATTGATATAAGCCTTAAATGTCACATTCTCAGCTCTAA
GGTTTTTAGAGAATTGGCCAGAAATCCACCTAGACTTTGCATTTTAAATT
GGGAAAAATGATTTGAGAGTCTCATGCATTTGGCTGTTGGGCTTCCACTG
TTTTTAAATCTTACATAACCTATCCACTCATTTCCCCAGGCTGCTCCATC
TGAGTTTCTGCCTTCTTTGAGTTTTAGTGCTCAGAGACTTTTAAACAGTC
TCACAGAGTTCCTTACACACTCCGAGGAACTGTAATTTTAAACCAGATTG
GTGCGAAGGGTAAAAAATTACCCAGAGAGTCTTTACATAGTAACTTCAAT
CTGATATAAACTTAGTTGACGGGGTTTCCAGTAGAAAAGGCTGCCATCTA
CTTAGAGTAGGGTTGGTTAGGACCAGTTAATACCCACCCAGCATGCCTCA
TTAAACTGGGACAAACATGATGCTGAATTACTGGCTCCCTGTTTTCTTGA
ATGTAGGTCATTTTGTATCCTTACGATTTAACATTTGGAGGGCTTTCCTG
TCTTCGCAGTACTGCAGTTTGTCAC
TCCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCTTATTATTATTCTGACTAAC
CAGGAGATGATGTCGGGTCTTTAATTAAGTTCCNNCCCAGATTTGTTTTT
GTGTTAATAATGCATTTTGTATTACCCTTCCTTTGCAAGGCCCCGTCTCC
CCTCTTGTCAACTTTCCCTGTGATTTTGCCCTTGTCCAAATGGAATAATA
AAGGCGGCATCCATTTCCAACCCCAATTTTTTCCCGGGGGGCCCATCCCG
GGAAAAAATTTTATNTTCNNCCCAACAGAATCCGGTGGCATTGGCGATAT
AATTTTCGGGGATATAGGCTTTCAACATCCCTGTGGGAAAAAAATTCCTT
CCCCAGGATTCTATCCCCCCCCCCTCTATTTTTGTGGGGGTATATTTTTC
TATTTATACTTTTTCTCCCCTCCGATAAAAAAAAAAAACACACTCTTTTA
CTCCCCCCCCCCCCCCTCCGCTTTTAAAAAAAAAATACCGGTTTGCGCCT
ACCTTTTCTTTTTTACTTGTTCCCCACACCCTCTCCTCTCTTTGTTTCCT
TGTTTTTTTCCTCTATTTTGTTTAGTGGATCTCTTCTCCTTCTTCTTTTT
CCCCTTTTTTTTTTCCCCACACAATTAATTCATTCTTATTTCCCTATTTG
CCCCCTTTTTCGTATTTTTTTTCCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_c06.b1 MSMg01no326_c06.b1 CHROMAT_FILE:
MSMg01no326_c06.b1 PHD_FILE: MSMg01no326_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:47 2005
         (669 letters)



>mm_chr2_74971564_74972632
          Length = 1069

 Score = 1272 bits (658), Expect = 0.0
 Identities = 664/666 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttccacatactgggggtgtagaggccctgcaataagattttctgcccttcatt 63
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 869 ggaattcttccacatactgggggtgtagaggccttgcaataagattttctgcccttcatt 810

                                                                       
Query: 64  caccaccttcatcctcagtgtgttaatttaataaaccctccggagtttagtagtgattga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 caccaccttcatcctcagtgtgttaatttaataaaccctccggagtttagtagtgattga 750

                                                                       
Query: 124 tataagccttaaatgtcacattctcagctctaaggtttttagagaattggccagaaatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tataagccttaaatgtcacattctcagctctaaggtttttagagaattggccagaaatcc 690

                                                                       
Query: 184 acctagactttgcattttaaattgggaaaaatgatttgagagtctcatgcatttggctgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 acctagactttgcattttaaattgggaaaaatgatttgagagtctcatgcatttggctgt 630

                                                                       
Query: 244 tgggcttccactgtttttaaatcttacataacctatccactcatttccccaggctgctcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgggcttccactgtttttaaatcttacataacctatccactcatttccccaggctgctcc 570

                                                                       
Query: 304 atctgagtttctgccttctttgagttttagtgctcagagacttttaaacagtctcacaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atctgagtttctgccttctttgagttttagtgctcagagacttttaaacagtctcacaga 510

                                                                       
Query: 364 gttccttacacactccgaggaactgtaattttaaaccagattggtgcgaagggtaaaaaa 423
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gttccttaaacactccgaggaactgtaattttaaaccagattggtgcgaagggtaaaaaa 450

                                                                       
Query: 424 ttacccagagagtctttacatagtaacttcaatctgatataaacttagttgacggggttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttacccagagagtctttacatagtaacttcaatctgatataaacttagttgacggggttt 390

                                                                       
Query: 484 ccagtagaaaaggctgccatctacttagagtagggttggttaggaccagttaatacccac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccagtagaaaaggctgccatctacttagagtagggttggttaggaccagttaatacccac 330

                                                                       
Query: 544 ccagcatgcctcattaaactgggacaaacatgatgctgaattactggctccctgttttct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccagcatgcctcattaaactgggacaaacatgatgctgaattactggctccctgttttct 270

                                                                       
Query: 604 tgaatgtaggtcattttgtatccttacgatttaacatttggagggctttcctgtcttcgc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgaatgtaggtcattttgtatccttacgatttaacatttggagggctttcctgtcttcgc 210

                 
Query: 664 agtact 669
           ||||||
Sbjct: 209 agtact 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)