BAC Information

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BAC

Clone NameMSMg01-326F05
Chromosome2 (Build37)
Map Location 169,785,570 - 169,941,052
singlet/doubletdoublet
Overlap geneLOC100043910, Zfp217
Upstream geneLOC100043909, EG668954, Tshz2, LOC100043737
Downstream geneSilg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326F05.T7 (MSMg01no326_f05.b1)MSMg01-326F05.TJ (MSMg01no326_f05.g1)
ACCAG443979AG443980
length721686
length of high quality
(start - end)
250 (69 - 318)305 (51 - 355)
definitionCHROMAT_FILE: MSMg01no326_f05.b1 PHD_FILE: MSMg01no326_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:01 2005CHROMAT_FILE: MSMg01no326_f05.g1 PHD_FILE: MSMg01no326_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,785,570 - 169,785,869)(169,940,750 - 169,941,052)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCG
GAATTCTAGGTCTCCCTAGTCTATATAGAGTTCTAAGCCAGCCAGGGCTA
TGCTACATAGTAAGACCTCGAGCACGCGTGCGTGTGTGTGTGTGTGTGTG
TGTGTGTCTGTGTGTGTGTGTGTGAATGATCACCATCATTATCATCATCA
CCACCACCACCACCATTATCTGCATCATCAACGTCAGGCGCTGAGGATTT
AGCAGTTAGGTACCAGGCTTTACATTCTATTGTCTTCTCTCAACAAATGT
TGGTGCTGAGCAATGCCCTTTCCACAATATTTCAGAGAAAACAGGCTTAG
TGAGCTAATACCTGCTTGGTTGGGACCAAGTTTATTCTTGGTGTGCAAAA
GTTTGGGGACAGACCCCCCCGCCTTAACATTCCAGCTAAAATCCATTAGC
TGTTGGTTGATTAATAAAAAATAAAGCAGAGTATTATACTTTATACACAA
TAGGATATAGAATGGCGTGACTCATGCTATCCAATTCAATCATATTCCTG
TGGTACACGCTTTTATTCAGAAAGTTTTACCGTGGCCTCGTTCCATCCTT
ATGCTTATCACCATCTATTTCCATTGATTGTCTTTGCCATAAATGCGTTC
TTATCTTTCATAATCTCCCACCCTCTTATTTCATTTCTTCTGGCCTTCCT
TACTTGCCCACTTTAATTAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCTCG
CGGAATTCTGTGAGTATGCCGCAGCCCAGAAGACATCTCTGAGGTACCAC
TTGGAGAGACATCACAAAGACAAGCAGCCGGTGGATGCTGCCGCTGAGTC
CAAAAGTGAAGGCAGGAGCCAGGAGCCGCAGGATGCGCTACTAACGGCTG
CTGACAGTGCGCAGACCAAAAATTTAAAGAGATTTCTTGATGGTGCCAAA
GATGTTAAGGGAAGCCCACCTGCCAAGCAGCTTAAGGAGATGCCTTCTGT
CTTCCAGAGTGTTCTCTCACCAGCACACAACAACGATACTCAGGATTTCC
ATAAACATGCAGCTGATAGTGCTGATAAAGTGAGGAAGAGTCCTGTCCCC
CACCCATCTGGACATGCAGAGAACGAAAGCAGGGCAGCCTCAGGCCAGCA
GCCCTGTCTGCATACTACAGGGGGTTGGGTCCTTATCACGGGAAGCTGGC
CATATGCAGAAAATGGATCAGGATGCTGACTACCGACATATTTCCGGTGC
TGACTGTCAGGACAGGCCTTCGAATCTATCCCTTGTGCCGTTCCACGTCT
GTCTTGCAATCCCTTTGAGCAAGTGTCCGATCCCCAGCATTGCCTGCCCC
CTTTTGACTTTCTAGACCTTTTATTCGGAATTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_f05.b1 MSMg01no326_f05.b1 CHROMAT_FILE:
MSMg01no326_f05.b1 PHD_FILE: MSMg01no326_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:01 2005
         (250 letters)



>mm_chr2_169785420_169786069
          Length = 650

 Score =  379 bits (196), Expect = e-110
 Identities = 250/300 (83%), Gaps = 50/300 (16%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctatatagagttctaagccagccagggctatgctacatagtaagacctcgagcacgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gtctatatagagttctaagccagccagggctatgctacatagtaagacctcgagcacgcg 210

                                                                       
Query: 61  tgc------------gtgtgtgtgtgtgtgtgtgtgtgtgtctgtg-------------- 94
           |||            |||||||||||||||||||||||||||||||              
Sbjct: 211 tgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtc 270

                                                                       
Query: 95  ------------------------tgtgtgtgtgtgaatgatcaccatcattatcatcat 130
                                   ||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgtgtgtgtctgtgtgtgtctgtctgtgtgtgtgtgaatgatcaccatcattatcatcat 330

                                                                       
Query: 131 caccaccaccaccaccattatctgcatcatcaacgtcaggcgctgaggatttagcagtta 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caccaccaccaccaccattatctgcatcatcaacgtcaggcgctgaggatttagcagtta 390

                                                                       
Query: 191 ggtaccaggctttacattctattgtcttctctcaacaaatgttggtgctgagcaatgccc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggtaccaggctttacattctattgtcttctctcaacaaatgttggtgctgagcaatgccc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no326_f05.g1 MSMg01no326_f05.g1 CHROMAT_FILE:
MSMg01no326_f05.g1 PHD_FILE: MSMg01no326_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:01 2005
         (305 letters)



>mm_chr2_169940548_169941252
          Length = 705

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctgtgagtatgccgcagcccagaagacatctctgaggtaccacttggagagacat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaattctgtgagtatgccgcagcccagaagacatctctgaggtaccacttggagagacat 446

                                                                       
Query: 63  cacaaagacaagcagccggtggatgctgccgctgagtccaaaagtgaaggcaggagccag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 cacaaagacaagcagccggtggatgctgccgctgagtccaaaagtgaaggccggagccag 386

                                                                       
Query: 123 gagccgcaggatgcgctactaacggctgctgacagtgcgcagaccaaaaatttaaagaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagccgcaggatgcgctactaacggctgctgacagtgcgcagaccaaaaatttaaagaga 326

                                                                       
Query: 183 tttcttgatggtgccaaagatgttaagggaagcccacctgccaagcagcttaaggagatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcttgatggtgccaaagatgttaagggaagcccacctgccaagcagcttaaggagatg 266

                                                                       
Query: 243 ccttctgtcttccagagtgttctctcaccagcacacaacaacgatactcaggatttccat 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 ccttctgtcttccagagtgttctctcaccagcacacagcaacgatactcaggatttccat 206

              
Query: 303 aaa 305
           |||
Sbjct: 205 aaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)