BAC Information

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BAC

Clone NameMSMg01-326M24
Chromosome2 (Build37)
Map Location 86,980,770 - 86,981,424
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110
Downstream geneOlfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326M24.T7 (MSMg01no326_m24.b1)MSMg01-326M24.TJ (MSMg01no326_m24.g1)
ACCAG444333AG444334
length738736
length of high quality
(start - end)		370 (44 - 413)662 (75 - 736)
definitionCHROMAT_FILE: MSMg01no326_m24.b1 PHD_FILE: MSMg01no326_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:34 2005CHROMAT_FILE: MSMg01no326_m24.g1 PHD_FILE: MSMg01no326_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGGA
ATTCTTACTTATCCCACCTGTCTAAGGCTTTTTACTGTTGAAGTTGTTAG
GTAATATTTAGTCACAACCTCTATTTTATTAGGGGGCATTGTTCTTTTTA
AATTATGTATCTGGTCTTGATTTAACAATGGTAAGAGGAATGTATCAAGA
AAATTGTCCTTTTTAAAATGTTTCCAATTTGGTAGGATGCAGGGTTTCAG
AATTCTTCCATATAATTTTTTTTGCATTTCATTGTTGTCTCTTGTTAATT
TATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTTTCCTGGTAAGGGTCTCTCAATCTTATTCATTT
TCTCAATCAAGTAACCCACCTACATTGATTCTTCATAATGCTTCTTTGTT
TCTATTTTATTGATTTCAGCCCTGAGTTTTATAGTATTTCTTGTCATCTA
CTCTTTTTAATTGCGATTTCATTGTTTGCTTTAAAAATTTTAAGTTAAGT
TCCTATGTGTTCTTTTGATGGTATAAGACCTCTCCCTTTCTATGTAGGCA
CTTTGCGTAATGAAACTGCTTGTTACAACAGTCTTATTTAATTCCTATGG
TTTTGGGCATATTGTGTATTCATTTTCACCCACGTTTACAAAATTTATGT
TTTTCCTTATGTTTGCTTAGACCCATATCTCACTCAGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATTCTTCCTACATAATTTTCATTC
TAAAGTGGACCCTGAATAAAAGCATTTATTTCATCAACATCCTCTAGCTT
TTATGAGAAAGACGGTATTATTTTTTTACAAAAAAGATACTAAGAGTTTA
GCTGTTTTCAAGTGTTTTGTAGTTTAATTATCATAAGCTGACATGGTAGA
AGGTCAAAACATATATCTTAAATTATATGTACCTGTCTACCAAATTACAT
GAACTTTTCCATTTAGTTTCACATCAACTTATATAATTGTTAAGTGACAA
AAATATGTTTTAAATTTCAAGAGTTCAGGAAGCAGATCATAAATTAAAAC
ATATACAAAAAGATAACACCACATATTGGAACTTTTCAGTAAATAAAAAA
TGAGAAATATATTAATCAAAAAATTATTTAATTCTTTGCCACTTTGGAAA
TTATTTTCAAAGTATAAATATTTTGGTTTTTAAACTGTCTAAAGAAGATC
TGTGTTTTTGGTAAAATATTTGCCATGAAAAGGTGAGAGTTTGCGTTCAA
TTCACAGACCTGTGTTAGAAAAAACAGCCAGTTAAGGTGGCACACAATTT
TTAATACCACTCTGAATGGCAGAGACTATTAGATTAGGGGAGAAACTTGC
CATCAAGTATAGCATACTCTGTAAGGTCCTGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_m24.g1 MSMg01no326_m24.g1 CHROMAT_FILE:
MSMg01no326_m24.g1 PHD_FILE: MSMg01no326_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:35 2005
         (662 letters)



>mm_chr2_86980570_86981631
          Length = 1062

 Score = 1212 bits (627), Expect = 0.0
 Identities = 648/655 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattcttcctacataattttcattctaaagtggaccctgaataaaagcatttatttcat 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattattcctacataattttcattctaaagtggaccctgaataaaagcatttatttcat 260

                                                                       
Query: 61  caacatcctctagcttttatgagaaagacggtattatttttttacaaaaaagatactaag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacatcctctatcttttatgagaaagacggtattatttttttacaaaaaagatactaag 320

                                                                       
Query: 121 agtttagctgttttcaagtgttttgtagtttaattatcataagctgacatggtagaaggt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 agtttagctgttttcaagtgttttgtagtttaattatcataagctgacatggtacaaggt 380

                                                                       
Query: 181 caaaacatatatcttaaattatatgtacctgtctaccaaattacatgaacttttccattt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 caaaacatatatcttaaattatatgtacctgtctaccaaatcacatgaacttttccattt 440

                                                                       
Query: 241 agtttcacatcaacttatataattgttaagtgacaaaaatatgttttaaatttcaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttcacatcaacttatataattgttaagtgacaaaaatatgttttaaatttcaagagt 500

                                                                       
Query: 301 tcaggaagcagatcataaattaaaacatatacaaaaagataacaccacatattggaactt 360
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 501 tcaggaagcagatcataaattaaaacatatacaaaaagataatatcacatattggaactt 560

                                                                       
Query: 361 ttcagtaaataaaaaatgagaaatatattaatcaaaaaattatttaattctttgccactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagtaaataaaaaatgagaaatatattaatcaaaaaattatttaattctttgccactt 620

                                                                       
Query: 421 tggaaattattttcaaagtataaatattttggtttttaaactgtctaaagaagatctgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaaattattttcaaagtataaatattttggtttttaaactgtctaaagaagatctgtg 680

                                                                       
Query: 481 tttttggtaaaatatttgccatgaaaaggtgagagtttgcgttcaattcacagacctgtg 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 tttttggtaaaatatttgccatgaaaaggtgagggtttgcgttcaattcacagacctgtg 740

                                                                       
Query: 541 ttagaaaaaacagccagttaaggtggcacacaatttttaataccactctgaatggcagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagaaaaaacagccagttaaggtggcacacaatttttaataccactctgaatggcagag 800

                                                                  
Query: 601 actattagattaggggagaaacttgccatcaagtatagcatactctgtaaggtcc 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actattagattaggggagaaacttgccatcaagtatagcatactctgtaaggtcc 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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