BAC Information

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BAC

Clone NameMSMg01-327A03
Chromosome2 (Build37)
Map Location 162,518,799 - 162,658,210
singlet/doubletdoublet
Overlap geneLOC100043696
Upstream genePtprt, LOC100043895, LOC100043896
Downstream geneLOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327A03.T7 (MSMg01no327_a03.b1)MSMg01-327A03.TJ (MSMg01no327_a03.g1)
ACCAG444480AG444481
length737736
length of high quality
(start - end)
634 (46 - 679)609 (75 - 683)
definitionCHROMAT_FILE: MSMg01no327_a03.b1 PHD_FILE: MSMg01no327_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:49 2005CHROMAT_FILE: MSMg01no327_a03.g1 PHD_FILE: MSMg01no327_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,657,581 - 162,658,210)(162,518,799 - 162,519,407)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCCTATGCATTTTCTTAACTGACTTTAGTTCAGAATAACCCATA
TGCCAAAGTGGCATATTTGGGCCATAGCCTGAACTGCTCCAAGTCCATGT
GAATTGGGAATTGAATTAGGAATAGAAATGAAGCAGCAACATGTACTAAT
GAGTAAGTACCCACGGTGGCTTAATCCTGTTGGGGGAAACCACTCACCTC
AGGATGATCTCGTGCAGCAGGAAGGGACCTAGATATTTACACAATTCCAT
TAGTCACCGGAAGAGGTGGCTCCTCTCTGGAACACCTGGCCAGCCGCCAT
GTATCAGCAACCACAGCTTTCTGTGGTTCCTGCAACAAGAGACCTGAGAT
GCATGAATACAGATGCTGACAGATGGCAGTCAAGGGAGCCTGGTGCGACA
TCTCAGGTGTATAAGCAAGATGTATAGCATAGAGCACATAACTTCTAGTT
TGTATGGATATGTGGATTTCTAGCCCAGCCTACCCGAAGCTAGCCCCTTT
TCTAGTCTTGAACCATATTGACTGAGTTAATAATGATTTTCAAATAAAAC
ACACTCACAATTGGGGAAAACACAGGCAATGAGGTACAACTAACCAGTCT
GTGAATAGTCATATGCCTCCTATTTAAGATTAATTTGTCTGCTAGACATG
AATACACACACACACACACTCACACACTGACATACAT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGCTCTCAGGCATGAGCCACATC
CAGCAGGAAGGCCACTCTCTTACCATTTCTGCCTGGGTTCCTGAGATTTC
AGGAATCACTGGGAGGCAAGTTGAGAACCCAGAGGTCAGGAGGGAAATCC
CCTTGACTAGTCTTCCTCTACTGTACACTCTCCAAAGCAGGAAGACTGCA
TGTTACATACCTGTCACCAGCATGAAGAACCCAGGAGGAAGAGCTGACAC
TACAAAAATACAGTCATAAATACTGTTTGCTGAGCACTTACCATATGCCG
TGCCCGATGCTAAGCCCCATCTCAGTTGGGATTCTACAAACCAGATCTTG
GAACAAAGTTGTGACAGCAGGGAGTTTGTGTGTGATGTGATCCTAGGATG
TACACTGGGAGATGAGACAGGAGAGGAAAGAAAGCACCAACAAAGGGGCC
AGTAGTCATCCCAGTGGAAAACTGGGGACCCTTTGAAGCTCTATGCTCAC
GCTGAGAATTATCCTGCAGATTGTGGGGGAGCTGGAAGTGTACTCACCAG
CTCCCAATTCTATTGGCTGGGAATCACACAGATGATGTGGAACTTGTAAA
TGCCCCCAAGTCAGAAGAATGCTTGGGCAGAGAGAATTACAGTTGCTCCA
GGGGAAGGGCCCAGGCATTCATGCATGTCCTGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_a03.b1 MSMg01no327_a03.b1 CHROMAT_FILE:
MSMg01no327_a03.b1 PHD_FILE: MSMg01no327_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:49 2005
         (634 letters)



>mm_chr2_162657285_162658318
          Length = 1034

 Score = 1210 bits (626), Expect = 0.0
 Identities = 629/630 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcctatgcattttcttaactgactttagttcagaataacccatatgccaaagt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gaattcatcctatgtattttcttaactgactttagttcagaataacccatatgccaaagt 867

                                                                       
Query: 65  ggcatatttgggccatagcctgaactgctccaagtccatgtgaattgggaattgaattag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ggcatatttgggccatagcctgaactgctccaagtccatgtgaattgggaattgaattag 807

                                                                       
Query: 125 gaatagaaatgaagcagcaacatgtactaatgagtaagtacccacggtggcttaatcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaatagaaatgaagcagcaacatgtactaatgagtaagtacccacggtggcttaatcctg 747

                                                                       
Query: 185 ttgggggaaaccactcacctcaggatgatctcgtgcagcaggaagggacctagatattta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgggggaaaccactcacctcaggatgatctcgtgcagcaggaagggacctagatattta 687

                                                                       
Query: 245 cacaattccattagtcaccggaagaggtggctcctctctggaacacctggccagccgcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cacaattccattagtcaccggaagaggtggctcctctctggaacacctggccagccgcca 627

                                                                       
Query: 305 tgtatcagcaaccacagctttctgtggttcctgcaacaagagacctgagatgcatgaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtatcagcaaccacagctttctgtggttcctgcaacaagagacctgagatgcatgaata 567

                                                                       
Query: 365 cagatgctgacagatggcagtcaagggagcctggtgcgacatctcaggtgtataagcaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagatgctgacagatggcagtcaagggagcctggtgcgacatctcaggtgtataagcaag 507

                                                                       
Query: 425 atgtatagcatagagcacataacttctagtttgtatggatatgtggatttctagcccagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atgtatagcatagagcacataacttctagtttgtatggatatgtggatttctagcccagc 447

                                                                       
Query: 485 ctacccgaagctagccccttttctagtcttgaaccatattgactgagttaataatgattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctacccgaagctagccccttttctagtcttgaaccatattgactgagttaataatgattt 387

                                                                       
Query: 545 tcaaataaaacacactcacaattggggaaaacacaggcaatgaggtacaactaaccagtc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcaaataaaacacactcacaattggggaaaacacaggcaatgaggtacaactaaccagtc 327

                                         
Query: 605 tgtgaatagtcatatgcctcctatttaaga 634
           ||||||||||||||||||||||||||||||
Sbjct: 326 tgtgaatagtcatatgcctcctatttaaga 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no327_a03.g1 MSMg01no327_a03.g1 CHROMAT_FILE:
MSMg01no327_a03.g1 PHD_FILE: MSMg01no327_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:49 2005
         (609 letters)



>mm_chr2_162518599_162519607
          Length = 1009

 Score = 1147 bits (593), Expect = 0.0
 Identities = 605/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgctctcaggcatgagccacatccagcaggaaggccactctcttaccatttctgcct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgctctcaggcattagccacatccagcaggaaggccactctcttaccatttctgcct 260

                                                                       
Query: 61  gggttcctgagatttcaggaatcactgggaggcaagttgagaacccagaggtcaggaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggttcctgagatttcaggaatcactgggaggcaagttgagaacccagaggtcaggaggg 320

                                                                       
Query: 121 aaatccccttgactagtcttcctctactgtacactctccaaagcaggaagactgcatgtt 180
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaatccccttgactaggcttcctctaccgtacactctccaaagcaggaagactgcatgtt 380

                                                                       
Query: 181 acatacctgtcaccagcatgaagaacccaggaggaagagctgacactacaaaaatacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatacctgtcaccagcatgaagaacccaggaggaagagctgacactacaaaaatacagt 440

                                                                       
Query: 241 cataaatactgtttgctgagcacttaccatatgccgtgcccgatgctaagccccatctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaatactgtttgctgagcacttaccatatgccgtgcccgatgctaagccccatctca 500

                                                                       
Query: 301 gttgggattctacaaaccagatcttggaacaaagttgtgacagcagggagtttgtgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgggattctacaaaccagatcttggaacaaagttgtgacagcagggagtttgtgtgtg 560

                                                                       
Query: 361 atgtgatcctaggatgtacactgggagatgagacaggagaggaaagaaagcaccaacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgatcctaggatgtacactgggagatgagacaggagaggaaagaaagcaccaacaaa 620

                                                                       
Query: 421 ggggccagtagtcatcccagtggaaaactggggaccctttgaagctctatgctcacgctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggccagtagtcatcccagtggaaaactggggaccctttgaagctctatgctcacgctg 680

                                                                       
Query: 481 agaattatcctgcagattgtgggggagctggaagtgtactcaccagctcccaattctatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaattatcctgcagattgtgggggagctggaagtgtactcaccagctcccaattctatt 740

                                                                       
Query: 541 ggctgggaatcacacagatgatgtggaacttgtaaatgcccccaagtcagaagaatgctt 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctgggaatcacacagatgacgtggaacttgtaaatgcccccaagtcagaagaatgctt 800

                    
Query: 601 gggcagaga 609
           |||||||||
Sbjct: 801 gggcagaga 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)