BAC Information

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BAC

Clone NameMSMg01-327D07
Chromosome2 (Build37)
Map Location 140,949,196 - 141,118,948
singlet/doubletdoublet
Overlap genenone
Upstream geneEsf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327D07.T7 (MSMg01no327_d07.b1)MSMg01-327D07.TJ (MSMg01no327_d07.g1)
ACCAG444625AG444626
length722726
length of high quality
(start - end)		378 (46 - 423)348 (74 - 421)
definitionCHROMAT_FILE: MSMg01no327_d07.b1 PHD_FILE: MSMg01no327_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:04 2005CHROMAT_FILE: MSMg01no327_d07.g1 PHD_FILE: MSMg01no327_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,949,196 - 140,949,568)(141,118,602 - 141,118,948)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATCCGCGGA
ATTCCAGCAGTCCCTTCTGTTTCCAAGGCAGTCAGGAGGCTGAGTTTATT
AAGAGCAGTAAACCTTTACTTAATCTGCAAACTTTCCTTGACACTGCATT
CAAAGCTTTCCTTTTATATTTAAGATGCCTTTGCCATGGGGCTCCTTGTT
TAGATATGTGTTTGCCTTTTGAAATTAGTGGTAGTTATTAAAGAGGTCTT
ATTGTTAGTTTTAATTATTTTGTGGAGTTCAATCCTGGAGATATAGGCTA
GGGAGATGTTCAACTGTTGTCAAAAGGTTCTCTTTATTAAGAAAGTAAAG
AAGATCACATTTTGAGCAGTCAAAGAAAATACACACATAATACTATTTCT
CTTTGATGCTTACATAGTTGCCCCCACCCCCAAGGCTCATAAGAGTGCCT
TTTTACATGGCTAAAAATTCTCCATGCTGTCAAGACACTGTTTGGTTCAC
TCAGAAGAAATCATACTATGAAAGTAGTATTTTTTCTGAAGGACTGATAT
CTTTTCTTGAGACAGCATTTTTTTCCCAGCATCTGGAATAACCAGCATTG
GCTATCTGTGTCAGACCAAGTCCACATACCACAGTTATTTATTAACAAGA
CTTGCACCCTTCTTAATAGCCTTGGTTACTTCCTCCCCAATGTAGAGGTC
AGACTCAATGAAGTTGTCCTTA

GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTGAAATCCCAAAGTAAGCGGCTCA
CCAATAGCAAGAGGTAGTTACACATTCCATTGGCTTTAGATAATTGGAAC
CAGCTTCTAAGAAATTGCCTTCAATTACTGGACTCCAGGAAAGGAGTGGA
AAGTTTCTGGCGAAGTACCAGAAAGAGAAAGGGAAGGAGGAAAGAGGAAC
ACAGAGAGAAAACATAAGGTCTGTTTTCCAGAATGCAAAGGAAGATCGTT
AAATACTATCCCCCACTTGTGCAACAGTCTGGATAATGTCAGGCCCACCT
GGAGGTAGTTTTAGTAAGAACACAGGATTAAAGCCATGGAAAGCTACTGT
CACACATTTTCATTTCAGAGCCCCCCCCCCCCGAAGTAGCATCTACAAAA
ATCATCACAGGCAAAAACAGTTTTCTTTTCATATGAGTTTTATAAGTGTT
TCCCAGTAAAGAACTACACAGCTACCCCAATTCGTTGCTTTCATTGCCTA
TAACCTGAAAGCATGAACATGAAGGATTGTTCATAATTCTTTAACCCAGT
TTACATACTTTAGCTACATTTTAGTTTTTAATTTGAGTCAAATTCATAAC
TAATTGATCTTGACCTGTTTCGAAACATCCCCATATATATACCTATATAT
ATATACATACATATCTATATTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_d07.b1 MSMg01no327_d07.b1 CHROMAT_FILE:
MSMg01no327_d07.b1 PHD_FILE: MSMg01no327_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:04 2005
         (378 letters)



>mm_chr2_140948994_140949771
          Length = 778

 Score =  690 bits (357), Expect = 0.0
 Identities = 369/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattccagcagtcccttctgtttccaaggcagtcaggaggctgagtttattaagagca 62
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccagcagtcccttatatttccaaggcagtcaggaggctgagtttattaagagca 262

                                                                       
Query: 63  gtaaacctttacttaatctgcaaactttccttgacactgcattcaaagctttccttttat 122
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 gtaaacctttacttaatctgcaaactttccttgacactgcatttaaagctttccttttat 322

                                                                       
Query: 123 atttaagatgcctttgccatggggctccttgtttagatatgtgtttgccttttgaaatta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atttaagatgcctttgccatggggctccttgtttagatatgtgtttgccttttgaaatta 382

                                                                       
Query: 183 gtggtagttattaaagaggtcttattgttagttttaattattttgtggagttcaatcctg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtggtagttattaaagaggtcttattgttagttttaattattttgtggagttcaatcctg 442

                                                                       
Query: 243 gagatataggctagggagatgttcaactgttgtcaaaaggttctctttattaagaaagta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagatataggctagggagatgttcaactgttgtcaaaaggttctctttattaagaaagta 502

                                                                       
Query: 303 aagaagatcacattttgagcagtcaaagaaaatacacacataatactatttctctttgat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 503 aagaagatcacattttgagcagtcaaagaaaatacacacataatactatttctgtttgat 562

                        
Query: 363 gcttacatagttg 375
           |||||||||||||
Sbjct: 563 gcttacatagttg 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_d07.g1 MSMg01no327_d07.g1 CHROMAT_FILE:
MSMg01no327_d07.g1 PHD_FILE: MSMg01no327_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:04 2005
         (348 letters)



>mm_chr2_141118402_141119149
          Length = 748

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgaaatcccaaagtaagcggctcaccaatagcaagaggtagttacacattccattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atctgaaatcccaaagtaagcggctcaccaatagcaagaggtagttacacattccattgg 488

                                                                       
Query: 61  ctttagataattggaaccagcttctaagaaattgccttcaattactggactccaggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctttagataattggaaccagcttctaagaaattgccttcaattactggactccaggaaag 428

                                                                       
Query: 121 gagtggaaagtttctggcgaagtaccagaaagagaaagggaaggaggaaagaggaacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gagtggaaagtttctggcgaagtaccagaaagagaaagggaaggaggaaagaggaacaca 368

                                                                       
Query: 181 gagagaaaacataaggtctgttttccagaatgcaaaggaagatcgttaaatactatcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagagaaaacataaggtctgttttccagaatgcaaaggaagatcgttaaatactatcccc 308

                                                                       
Query: 241 cacttgtgcaacagtctggataatgtcaggcccacctggaggtagttttagtaagaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cacttgtgcaacagtctggataatgtcaggcccacctggaggtagttttagtaagaacac 248

                                                          
Query: 301 aggattaaagccatggaaagctactgtcacacattttcatttcagag 347
           ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 247 aggattaaagccatggagagctactgtcacacattttcatttcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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