Query= MSMg01no327_e21.b1 MSMg01no327_e21.b1 CHROMAT_FILE:
MSMg01no327_e21.b1 PHD_FILE: MSMg01no327_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:11 2005
(247 letters)
>mm_chr2_85515582_85516228
Length = 647
Score = 333 bits (172), Expect = 7e-96
Identities = 215/242 (88%), Gaps = 20/242 (8%)
Strand = Plus / Minus
Query: 5 gaattctgtatattcaattaaccatagagttcaatatagtacctgcaatatgatctataa 64
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 369 gaattctgtaaattaaattaaccatagagttcaatatagtacctgcaatatgatttataa 310
Query: 65 tgagtgtgttcttttcagtgttacatgagcagaaaaattatgcatatgaactttaattct 124
| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 309 taagtgtgttcttttcagtgttacatgagcagaaaaatgatgcatatgacctttaattct 250
Query: 125 tgacacatgagaaattcttaattaattatggaaacatattaaagttgtgtgtgtgtgtgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgacacatgagaaattcttaattaattatggaaacatattaaagttgtgtgtgtgtgtgt 190
Query: 185 gtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgaactttctgatagagatactatgaaag 244
|| |||||||||||||||||||| |||||||||||||||||
Sbjct: 189 gt--------------------gtgtgtgtgtgaactttctgttagagatactatgaaag 150
Query: 245 ca 246
||
Sbjct: 149 ca 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no327_e21.g1 MSMg01no327_e21.g1 CHROMAT_FILE:
MSMg01no327_e21.g1 PHD_FILE: MSMg01no327_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:11 2005
(562 letters)
>mm_chr2_85335739_85336700
Length = 962
Score = 1048 bits (542), Expect = 0.0
Identities = 557/562 (99%)
Strand = Plus / Plus
Query: 1 atttttcttgttatgcctaaaggacaccatcgagaagccggctccttggccttgtgatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttcttgttatgcctaaaggacaccatcgagaagccggctccttggccttgtgatgt 260
Query: 61 catcttcatgtagcttatatattatttctgctggacatgatgagaatgatttgagaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcttcatgtagcttatatattatttctgctggacatgatgagaatgatttgagaaact 320
Query: 121 tgtaagcaatagccccactttcccataatctttctagaagctctaatatgagacataatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaagcaatagccccactttcccataatctttctagaagctctaatatgagacataatg 380
Query: 181 attatctaccactcacagacataaagagtgggacgtggtattccatttccctccaacatg 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatctaccactcacagaaataaagagtgggacgtggtattccatttccctccaacatg 440
Query: 241 ccctaacacttttacagtggaagttcgagctccggtttgtatctgtttcctgactgcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctaacacttttacagtggaagttcgagctccggtttgtatctgtttcctgactgcctc 500
Query: 301 aggagtcactttccagatatctccctctaggattgcttacgccccacttacatcccatta 360
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 501 aggagtcactttccagatatctccctctaggattgcttatgtcagacttacatcccatta 560
Query: 361 cagtctttcctactcctatcaagttatacttttcaggtttcacatccactctcttattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtctttcctactcctatcaagttatacttttcaggtttcacatccactctcttattca 620
Query: 421 ctcatttcctatttattttgaagcaaatcagattctgatctaggtaggtacctgtgatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatttcctatttattttgaagcaaatcagattctgatctaggtaggtacctgtgatgc 680
Query: 481 taagtaagacgtgatgtgagaaggttcccacgctagctatttacaatctgatgggaacag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagtaagacgtgatgtgagaaggttcccacgctagctatttacaatctgatgggaacag 740
Query: 541 ttgacagccaaactcaacatga 562
||||||||||||||||||||||
Sbjct: 741 ttgacagccaaactcaacatga 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
