Query= MSMg01no327_g01.b1 MSMg01no327_g01.b1 CHROMAT_FILE:
MSMg01no327_g01.b1 PHD_FILE: MSMg01no327_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:16 2005
(343 letters)
>mm_chr2_168857064_168857805
Length = 742
Score = 609 bits (315), Expect = e-179
Identities = 336/343 (97%), Gaps = 1/343 (0%)
Strand = Plus / Plus
Query: 1 cagatggcagcagtgtggaagatggggcctggttggaggaaacagatcttaatggtgtaa 60
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 201 cagatgacagcagtgtggaagatggggcctggtag-aggaaacagatcttaatggtgtaa 259
Query: 61 ccggtccctaatcccactctgcctttaccacatgtctccgcagtggtggtgttctgcctt 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 ccggtccctaatcccactctgcctttaccacatgtctctgcagtggtggtgttctgcctt 319
Query: 121 gtctaaagcaatgggtaactgggtcgacagtggagggcactgtttagcttaggtttccat 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtctcaagcaatgggtaactgggtcgacagtggagggcactgtttagcttaggtttccat 379
Query: 181 tgctgtgaacagacaccatgaccaaggcaactcttataaaggacaacatttaattggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgctgtgaacagacaccatgaccaaggcaactcttataaaggacaacatttaattggggc 439
Query: 241 tggcttacaggttcagaggttcagttctcttattattatcattaaggcaggacatggagg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 tggcttacaggttcagaggttcagttctcttattattatcattaaagcaggacatggagg 499
Query: 301 catccaggcaggtatggtgcaggaggagctgagagttctacat 343
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 catccaggcaggcatggtgcaggaggagctgagagttctacat 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space: 244822
Effective search space used: 244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no327_g01.g1 MSMg01no327_g01.g1 CHROMAT_FILE:
MSMg01no327_g01.g1 PHD_FILE: MSMg01no327_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:16 2005
(373 letters)
>mm_chr2_169013494_169014266
Length = 773
Score = 640 bits (331), Expect = 0.0
Identities = 364/377 (96%), Gaps = 4/377 (1%)
Strand = Plus / Minus
Query: 1 tgtcatgagtagcaggcgattgcagtgtcatcaaggtctgccatgactgggggtcggctc 60
||||||||||||||||| ||||| ||||||||||| | |||||||||| |||||||||||
Sbjct: 386 tgtcatgagtagcaggcaattgcggtgtcatcaagatgtgccatgacttggggtcggctc 327
Query: 61 tccgtgtagtaaggatcccctgagtcctcaaagtggtgtcacatttcttcagttccgccc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccgtgtagtaaggatcccatgagtcctcaaagtggtgtcacatttcttcagttccgccc 267
Query: 121 tttagagctcagtggaagatggtggcaggcagcaataaatgggtgttgggaactctgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttagagctcagtggaagatggtggcaggcagcaataaatgggtgttgggaactctgggg 207
Query: 181 cacagtagggatgactcagtggttaggagacttgctgctctcgcagaggagcaaaattca 240
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 cacagtagggatggctcagtggttaggagacttgctgctcttgcagaggagcaaaattca 147
Query: 241 gttctcagtgccaaagttgggtagctcacaaccactccaagggacctaatatccttttct 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gttctcagtgccagagttgggtagctcacaaccactccaagggacctaatatccttttct 87
Query: 301 ggcctccataggcatctgcatgcatgatccaggcctgtgtaaactcataacacaca---- 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ggcctccataggcatctgcatgcatgatccaggcctgtgtaaactcataacacacatatg 27
Query: 357 cacacacacacacacac 373
|||||||||||||||||
Sbjct: 26 cacacacacacacacac 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
