BAC Information

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BAC

Clone NameMSMg01-327M23
Chromosome2 (Build37)
Map Location 177,833,965 - 177,834,305
singlet/doubletsinglet
Overlap genenone
Upstream gene6230416C02Rik, LOC635470, LOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik
Downstream genePhactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327M23.T7 (MSMg01no327_m23.b1)MSMg01-327M23.TJ (MSMg01no327_m23.g1)
ACCAG445070AG445071
length751749
length of high quality
(start - end)
371 (46 - 416)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no327_m23.b1 PHD_FILE: MSMg01no327_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:47 2005CHROMAT_FILE: MSMg01no327_m23.g1 PHD_FILE: MSMg01no327_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGACCCATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGTTCCACTATG
TTCATAGCAGCCTTACCCACCACACCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAATATATAAGATATAATTTGCTAAACACATGAATCTCGAGA
AGGATGAAGACTGAAGTGTGGGCACTATGCCCCTCCTTAGATTTGGGAAC
A
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTGAAGACAGAACACAGAAGTAAA
ATGGCTGACAGACATATGGGTCAGGCAGTGTGCTCTGAGGCCTCCTTTAG
AATCAGTACATGTGTGCAGGCTTAAGAAGGCACCATCAGGATTGTGGGAC
ATCTTCCTCCTACACAAGCTGGAACAGTAGATCTGATACAATGTCAGCTG
ACTGGTCTACCTCTTGATGGACAGCCTCCCTCAGTCAGCCTCTGTCAGGC
AGCCTTTATTTCTCTAGCCAGGAGAAAGCAGATTCCTACTCTGCTAACCC
TGGCTTGGCTCACAGCAGTGTCGATGAGCAGGCACTACCTCCAATCTGAA
ACTAACTCAGAAGGACCCCACGCCACTCACAGGGTTCTCCCTGGAGTTTT
ATAAGCAAGAAATGATTACCGAGGGAGAGGAAACTCTCAAGGTGGAGCTG
CCTGCAAACCGTGTAGAGAACTCCAGAGATTCAGTTTCTCCATGTTGGGT
GGCTTTGTTAATGATGCAGCGAGCTGACTATGTCAACCATGCTCCAGAAA
CCCCAATAAAAATTTCACTGGTCTTTAAATTACTTAGGAGACACAGCTCT
GGGTATGCTTGGGAGTTTTGAGAGAAGCTTAAGAAAAGATGGAAGAGCTG
CCCTGAATGGGATGGCTCCAACTGGTGGTCCAGCTTAGGCAGAAAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_m23.g1 MSMg01no327_m23.g1 CHROMAT_FILE:
MSMg01no327_m23.g1 PHD_FILE: MSMg01no327_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:47 2005
         (343 letters)



>mm_chr2_177833765_177834507
          Length = 743

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgaagacagaacacagaagtaaaatggctgacagacatatgggtcaggcagtgtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttctgaagacagaacacagaagtaaaatggctgacagacatatgggtcaggcagtgtgct 482

                                                                       
Query: 61  ctgaggcctcctttagaatcagtacatgtgtgcaggcttaagaaggcaccatcaggattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgaggcctcctttagaatcagtacatgtgtgcaggcttaagaaggcaccatcaggattg 422

                                                                       
Query: 121 tgggacatcttcctcctacacaagctggaacagtagatctgatacaatgtcagctgactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgggacatcttcctcctacacaagctggaacagtagatctgatacaatgtcagctgactg 362

                                                                       
Query: 181 gtctacctcttgatggacagcctccctcagtcagcctctgtcaggcagcctttatttctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 gtctacctcttgatggacagcctccctcagtcagcctctgtcaggcagcctttattcctc 302

                                                                       
Query: 241 tagccaggagaaagcagattcctactctgctaaccctggcttggctcacagcagtgtcga 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagccaggagacagcagattcctactctgctaaccctggcttggctcacagcagtgtcga 242

                                                    
Query: 301 tgagcaggcactacctccaatctgaaactaactcagaagga 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgagcaggcactacctccaatctgaaactaactcagaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)