BAC Information

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BAC

Clone NameMSMg01-328K02
Chromosome2 (Build37)
Map Location 39,803,203 - 39,803,527
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328K02.T7 (MSMg01no328_k02.b1)MSMg01-328K02.TJ (MSMg01no328_k02.g1)
ACCAG445679AG445680
length741759
length of high quality
(start - end)
425 (43 - 467)326 (71 - 396)
definitionCHROMAT_FILE: MSMg01no328_k02.b1 PHD_FILE: MSMg01no328_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:50 2005CHROMAT_FILE: MSMg01no328_k02.g1 PHD_FILE: MSMg01no328_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTTGCTCTGAGCCCCATTTTTTAATGGGGCTATTTGTTTTTCT
GGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
TTCTTATTGACAGTGTCTTTGCCTTACAGAAGCTTTGCAATTTTATGAAA
TCCCATTTGTCTATTCTTGATCTTACAGCACAAGCTGTTGCTGTTCTATT
CAGGAATTTTCTCCCTGTGCCCATATCTTCGAGGCTTTCTCCCACTTTCT
CCTCTATATGTTTCACGGTCTCTGGTTTTATGTGGAGTTCCTTACTCCAC
TTAGATTTGACCTAACCCCCACGAGATATAATTGGATCAATTCACATTCT
TCTACATGATAACTGCCAGTCGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTTTTTCCACTGGATGTTTTTTAATCCCTTGTCTAAGATCATGTGACCA
TAGGTGCGTGGGTTGATTTCTGGTCCTTCAATTCTATTCCATTGTTCTAC
TTGTTTGTCGCTATTCTATAACCATGCAGTTTATTATCACTATTGCTCTG
TTTTATTCTTTTTAGTTACTCTCTGGTTGTTCTTCCATCACTTCCAGGTT
CTTTTGTGTCTAGTTTTTCGCTACCCCTATTAACGTTGCTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAATTTAGGTGGATACGGAGAAAGAAAGAA
TCTGGATAAAGTTGGAGATATGGAAAAATATGATTGGTCAAACTATATTT
AAAACTTTAAATTATTTTAAATAATAAAAATGTACTGTAAAAAAGAACTG
GATGCTGACATTGTATCTGTATTGATATATTGATGATTACACATAAACCC
AAAGAAAAATTACTGTGATTTTGCCAATATTGATATATTGATATTAGACA
TATACCCTAATAAAGATACTGTGTTAGTGCATGTATCCAAAGGGAAAAAA
CACTGCATTAGTGCCTTTGTTGATATATTGATTTTAGACAGGTATTACAA
AGAATAGAAATGACCACACCCCATCAAGGACTATTTAATAAGTGTCCTGG
TTTTGACTCATTGGACTTCATACAAAGCTTACCATATTTTGAATATTTGA
CAGTCCCCTTGAAAAGCGTGCAAAACTAATTGAAATGTCTGTGCTTTATC
TTCTCAAGCACCATTATAATGATACATTTTCTCATATTTTAACAATCTTA
TTAAAAAATTTTTATAACACGAATATTCTTGATAAATGGACCAGCGCCCA
TACTTTCTTCCCTACAAACATCTGTCTTTGCTTCTCATACAAGCCCCCTG
CGGTCACTAACAATCCTCTGTCTTTGCTATTCCCCCGATCTTTTTACAAC
TCCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_k02.g1 MSMg01no328_k02.g1 CHROMAT_FILE:
MSMg01no328_k02.g1 PHD_FILE: MSMg01no328_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:50 2005
         (326 letters)



>mm_chr2_39802888_39803613
          Length = 726

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatttaggtggatacggagaaagaaagaatctggataaagttggagatatggaaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 640 aaatttaggtggatacggagaaagaaagaatctggataaagttggagatatggaagaata 581

                                                                       
Query: 61  tgattggtcaaactatatttaaaactttaaattattttaaataataaaaatgtactgtaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 580 tgattggtcaaactatatttaaaactttaaattattttaaataataaaaatgtattgtaa 521

                                                                       
Query: 121 aaaagaactggatgctgacattgtatctgtattgatatattgatgattacacataaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaaagaactggatgctgacattgtatctgtattgatatattgatgattacacataaaccc 461

                                                                       
Query: 181 aaagaaaaattactgtgattttgccaatattgatatattgatattagacatataccctaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaagaaaaattactgtgtttttgccaatattgatatattgatattagacatataccctaa 401

                                                                       
Query: 241 taaagatactgtgttagtgcatgtatccaaagggaaaaaacactgcattagtgcctttgt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taaagatactgggttagtgcatgtatccaaagggaaaaaacactgcattagtgcctttgt 341

                                    
Query: 301 tgatatattgattttagacaggtat 325
           |||||||||||||||||||||||||
Sbjct: 340 tgatatattgattttagacaggtat 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)