BAC Information

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BAC

Clone NameMSMg01-329D13
Chromosome2 (Build37)
Map Location 24,302,682 - 24,303,235
singlet/doubletsinglet
Overlap genePax8
Upstream geneLOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4
Downstream geneLOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329D13.T7 (MSMg01no329_d13.b1)MSMg01-329D13.TJ (MSMg01no329_d13.g1)
ACCAG446111AG446112
length743742
length of high quality
(start - end)
637 (45 - 681)506 (76 - 581)
definitionCHROMAT_FILE: MSMg01no329_d13.b1 PHD_FILE: MSMg01no329_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:36 2005CHROMAT_FILE: MSMg01no329_d13.g1 PHD_FILE: MSMg01no329_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCCAACACCTCTGGCTCTTATACTCTTCTTACCCCCTTTTCTACG
TAGTCCTCTGACCTTGAAGGGAGGATGTAATATTTATGTTCCATTTAGGG
CTAAGCATTCCAAAGTCACTTCCTCTCTTCACAGTGAATGGCTATGGGTC
TCTGACAAACAAAAATGCTTGGTTCCACCCTAGATTAACTGATTTAAAAA
CTTAAGGTATTGTACTCAATAGGTCTTTATTCAATAAACCCTACAATTGA
CCCTGGTGTGTATTTCAATTTGAGAACTCCTTGGTCTTAGGGTCAAATCA
GAGTTACCACCATGTTATATCAACCACATTATTGCTACAATGAAAACCTT
TACATTTATATCAAGACTTTTAGCTAATGAGATGATTCTTTATCTTCATA
CCAACATTGCTGTTGCTATTGTCAGTAGCAGGTACAATGAAAAATGCTGT
CAAACTCTATGTCATGCCTACAGCTAGAAACAAACAAATCTACTCAAATG
ATATGACTAAAACACATAGAATCAAGGCAGAAATATGACCCAAGCTCTTC
CCCAATAAAATAATACCTTAGAGAACTCAGAGTTCAGGGTCCAGTGTTGT
GATTGTCTGCTGTGTATGTAGCGAGCTTCAGTAGGGTTCTGAGCATGTGG
ATATCCAAGGATGCTGAGTCAGTCCTTAGGATAATTTAGGATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGG
AAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTA
GCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGA
TTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGC
CCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCAA
TGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGC
ATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAG
AATACGTACAGATTAACCAACTTGCCGAGTCGGTCCGTAAATACGGAACC
AATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCACT
AACTCCTGCTGACTGGCAAATGATTGTAAAAGCCGCTCTCCCTAGTATGG
GCAAATATATGGAATGGAGAGCTCTTTGGCATGAAACTGTACAAGCGCAG
GCCCGAGCAAACGCAGCTGCTTTGACTCCATAGCAGAGAGATTGGACTTT
TGACTTGTTAATGTTTCATGCAGCTTATTCTGCTGATCATACCAATTACC
ATCGTGTAGCCCATGCCCCGATTTCTTTCCCGGTTATTAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_d13.b1 MSMg01no329_d13.b1 CHROMAT_FILE:
MSMg01no329_d13.b1 PHD_FILE: MSMg01no329_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:36 2005
         (637 letters)



>mm_chr2_24302199_24303235
          Length = 1037

 Score = 1048 bits (542), Expect = 0.0
 Identities = 551/554 (99%)
 Strand = Plus / Minus

                                                                        
Query: 84   taatatttatgttccatttagggctaagcattccaaagtcacttcctctcttcacagtga 143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 taatatttatgttccatttagggctaagcattccaaagtcacttcctctcttcacagtga 978

                                                                        
Query: 144  atggctatgggtctctgacaaacaaaaatgcttggttccaccctagattaactgatttaa 203
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  acggctatgggtctctgacaaacaaaaatgcttggttccaccctagattaactgatttaa 918

                                                                        
Query: 204  aaacttaaggtattgtactcaataggtctttattcaataaaccctacaattgaccctggt 263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  aaacttaaggtattgtactcaataggtctttattcaataaaccctacaattgaccctggt 858

                                                                        
Query: 264  gtgtatttcaatttgagaactccttggtcttagggtcaaatcagagttaccaccatgtta 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  gtgtatttcaatttgagaactccttggtcttagggtcaaatcagagttaccaccatgtta 798

                                                                        
Query: 324  tatcaaccacattattgctacaatgaaaacctttacatttatatcaagacttttagctaa 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  tatcaaccacattattgctacaatgaaaacctttacatttatatcaagacttttagctaa 738

                                                                        
Query: 384  tgagatgattctttatcttcataccaacattgctgttgctattgtcagtagcaggtacaa 443
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 737  tgagatgattctttatcttcatcccaacattgctgttgctattgtcagtagcaggtacaa 678

                                                                        
Query: 444  tgaaaaatgctgtcaaactctatgtcatgcctacagctagaaacaaacaaatctactcaa 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  tgaaaaatgctgtcaaactctatgtcatgcctacagctagaaacaaacaaatctactcaa 618

                                                                        
Query: 504  atgatatgactaaaacacatagaatcaaggcagaaatatgacccaagctcttccccaata 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  atgatatgactaaaacacatagaatcaaggcagaaatatgacccaagctcttccccaata 558

                                                                        
Query: 564  aaataataccttagagaactcagagttcagggtccagtgttgtgattgtctgctgtgtat 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  aaataataccttagagaactcagagttcagggtccagtgttgtgattgtctgctgtgtat 498

                          
Query: 624  gtagcgagcttcag 637
            |||| |||||||||
Sbjct: 497  gtagtgagcttcag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)