Query= MSMg01no329_f11.b1 MSMg01no329_f11.b1 CHROMAT_FILE:
MSMg01no329_f11.b1 PHD_FILE: MSMg01no329_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:45 2005
(575 letters)
>mm_chr2_48418673_48419646
Length = 974
Score = 1065 bits (551), Expect = 0.0
Identities = 569/575 (98%), Gaps = 1/575 (0%)
Strand = Plus / Plus
Query: 1 tagtagatgtgcagcttggccagttacctgtgggacaatgatgtcccaaataaatgagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtagatgtgcagcttggccagttacctgtgggacaatgatgtcccaaataaatgagtg 260
Query: 61 cttatgcttcaagtacatacatttcctacatattctgtctgctttcctggctctggccac 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatgcttcaagtacataaatttcctacatattctgtctgctttcctggctctggccac 320
Query: 121 aaaacaatcctgtctgaaagttttgatttcattctaagagcccagtgcataagaacaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacaatcctgtctgaaagttttgatttcattctaagagcccagtgcataagaacaaac 380
Query: 181 gatatttaaacaaaacaaaagtcatgtggaaaatagcaataaattagaaggcacagggaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatttaaacaaaacaaaagtcatgtggaaaatagcaataaattagaaggcacagggaa 440
Query: 241 aaaaaagttaaataagccacagggaaaatgattccatttaaaacaggcttattattgggc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaa-gttaaataagccacagggaaaatgattccatttaaaacaggcttattattgggc 499
Query: 301 ctaaactctacccctactctgacaaagtacagccacctcaggcccatgacaccgagaagc 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 ctaaactctacccctactctgacaaagtacagccacctcaggtccatgacaccgagaagc 559
Query: 361 aatcttacaaaggcctttgcagaatgcaatctgcactttctcactggtgactgttcaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatcttacaaaggcctttgcagaatgcaatctgcactttctcactggtgactgttcaact 619
Query: 421 ctgccttgaagacataagcaaaactaaccagaaagagcctctctgtgcaccatttcccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgccttgaagacataagcaaaactaaccagaaagagcctctctgtgcaccatttcccag 679
Query: 481 cagatgtggctgtgttccacaacccaccttcataggcgccaggggggccagaatctagcc 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 cagatgtggctgtgttccacaacccaccttcagaggcgccaggggggccagaatctagcc 739
Query: 541 actcccagtcatttcctttctcccatccctgtctt 575
|||||||||||||||||||||||||||||||||||
Sbjct: 740 actcccagtcatttcctttctcccatccctgtctt 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space: 544660
Effective search space used: 544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_f11.g1 MSMg01no329_f11.g1 CHROMAT_FILE:
MSMg01no329_f11.g1 PHD_FILE: MSMg01no329_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:45 2005
(336 letters)
>mm_chr2_48589930_48590665
Length = 736
Score = 627 bits (324), Expect = 0.0
Identities = 333/336 (99%)
Strand = Plus / Minus
Query: 1 ttgggttcatctagatgaatggcaagactgaatcgaggcagtggcatttggcaagaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttgggttcatctagatgaatggcaagactgaatcgaggcagtggcatttggcaagaagag 477
Query: 61 atacgggatagatttgagaagtgttttagtgataacattggccaaagatgatcaaattac 120
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 476 atatgggatagatttgagaagtgttttagagataacattggccaaagatgatcaaattac 417
Query: 121 atctgggcctcccttcagagtcttggctacagaagaggatgataaaagaagttggaactg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 416 atctgggcctcccttcagagtcttggcttcagaagaggatgataaaagaagttggaactg 357
Query: 181 gaagtggtccagaatccaaaggggcaggatgtgttgcctgagtgccttctgggacaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaagtggtccagaatccaaaggggcaggatgtgttgcctgagtgccttctgggacaagca 297
Query: 241 cttttccatttcagcatttcctgcggttggtgttgccaaggcgttcatgtgtcccctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cttttccatttcagcatttcctgcggttggtgttgccaaggcgttcatgtgtcccctgtg 237
Query: 301 aggtgcagaagcatcgtcttgctgtggatccaaatg 336
||||||||||||||||||||||||||||||||||||
Sbjct: 236 aggtgcagaagcatcgtcttgctgtggatccaaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
