BAC Information

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BAC

Clone NameMSMg01-329H07
Chromosome2 (Build37)
Map Location 172,357,505 - 172,357,745
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957
Downstream geneTcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329H07.T7 (MSMg01no329_h07.b1)MSMg01-329H07.TJ (MSMg01no329_h07.g1)
ACCAG446287AG446288
length744761
length of high quality
(start - end)
470 (73 - 542)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no329_h07.b1 PHD_FILE: MSMg01no329_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:55 2005CHROMAT_FILE: MSMg01no329_h07.g1 PHD_FILE: MSMg01no329_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGAATCCGCG
GAATTCATTCCTTCTCACAGATCAAGGTTATGGTCCATCTCTGGGGAGGT
CAAGGTGGGAAGGTCAGTCAGGTCACAGCCACAGTCAAAAGCAGGGAGAG
ATGCTTGATTACAGTGCTTAACTTGATTTATCTTCTTATGCAGTCCAGGA
CCTCCTGCCTAGGGAATGCGGCTGCCCACAGTGGGCTAGGTCTTCCCACA
TTCATGAATTTAATTAAGACAATCCCCTACAGATGTATGCACAGGACAAC
CCAATGTAGGCAACCTGTCATTAGCTAATCTCTTCCCGGGTGATTCTAGG
CTGGGTGAAGTTGGCAATGAAAGGGAACTATCCCAATGACTAAAGTCCAC
ATGAGACTGACCATTGCCCCACTTAGCTTTTACTCAGTGATCTTTTCCTG
GCTGGGATGCCACCCAGGATACTCATTCCATGACACTTAGCTACAGGCTT
CAGTGGCAATGTATGAGGCCCACGTTGTCTCTCATGGCCTGCATAGTTTG
CAGGAAACCTGGTTGGGCCTCTTACTACTGATACTGACCTTACTCAGCTG
CAGAGGTGTACTCCCCGGTCTCTATATTGGCTAATTCCGTTTTGCCCATT
TTCATCTTCAGGCTCATTCCATGCTGTTACATTATAGCGATTGCCGTTTT
CCTTTTGTCCCATGCAACCCTTTTCCCTAGCCCGCCTTTGCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGTCTTTCCAGTGAGGTT
GCCCTTCCTCAGTCTCATAAGCAGCCCTGCCCCATGGCTGTGATCATCAG
AGTCTCTGTCACTGTGGGGTCCTTCTCTCCCCACTGCTGGGGTCTGTTTC
TGGCTGTCTAGAGTGAGGCCACAGAAGTCAAGGGTTTGGGCCTCTTTCCT
TCCCAGCACAAGGCCTGGATGTTTGTGCAACGAATATGTAACAGACAGGG
CCGAAATGATCTTGATGGGTCTGAGTAGCCAGATAGCCCAATGGTACATG
CAATCTGATGTCCAATCCAGAGGGGCCTTCTCAGATGTCCAGGTGTCAGA
TGCAGGACGACTATCCCTTTGTTAAGGACAACTCCTTTCTCACAGGCACA
GGTCACCATACACATCTCTTCTTTGCCTTCTACATATTGAATACCTGACA
GGATCTTCCTCCTCCTCCTTCTTCTTTAGCGTTTTTTCTATACAGCCTTT
TCTCTGTGTTGTTTCACTCGCCCTTCCCTTTCCTCCTTTATCTTTTTTTC
GACCTTATATCTCACTGTTGCGCATCAATAGTAGAGCTTTATTATTTTTA
TTGTCTAATACCCTTTTTTTTCTTTTCCGCCGATTTAACCTATATTTTCT
CCCTATATTTCCCCTTTTTAACCCACACACTTATCCACTTCTTTATCCTT
TCTTTATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_h07.g1 MSMg01no329_h07.g1 CHROMAT_FILE:
MSMg01no329_h07.g1 PHD_FILE: MSMg01no329_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:55 2005
         (241 letters)



>mm_chr2_172357305_172357945
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagtctttccagtgaggttgcccttcctcagtctcataagcagccctgccccatg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagtctttcctgtgaggttgcccttcctcagtctcataagcagccctgccccatg 260

                                                                       
Query: 61  gctgtgatcatcagagtctctgtcactgtggggtccttctctccccactgctggggtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtgatcatcagagtctctgtcactgtggggtccttctctccccactgctggggtctg 320

                                                                       
Query: 121 tttctggctgtctagagtgaggccacagaagtcaagggtttgggcctctttccttcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctggctgtctagagtgaggccacagaagtcaagggtttgggcctctttccttcccag 380

                                                                       
Query: 181 cacaaggcctggatgtttgtgcaacgaatatgtaacagacagggccgaaatgatcttgat 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaaggcctggatgtttgtggaacgaatatgtaacagacagggccgaaatgatcttgat 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)