BAC Information

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BAC

Clone NameMSMg01-330A22
Chromosome2 (Build37)
Map Location 84,630,472 - 84,630,751
singlet/doubletsinglet
Overlap genenone
Upstream geneItgav, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1
Downstream geneUbe2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330A22.T7 (MSMg01no330_a22.b1)MSMg01-330A22.TJ (MSMg01no330_a22.g1)
ACCAG446715AG446716
length761759
length of high quality
(start - end)
322 (46 - 367)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no330_a22.b1 PHD_FILE: MSMg01no330_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:42 2005CHROMAT_FILE: MSMg01no330_a22.g1 PHD_FILE: MSMg01no330_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTCTGGGTCCCTGGGAAAGCCGGGAGCACTCTACGCTGCTGAA
CTAATTTGCTCTTCTTCAAAGTTCCCCACCCTCTCTTTTTCTCTCCTTCA
GTAAGATGTGGCAGTGTGGGTTTAAAGGTACCCTGCCTTTGGCTTCTTAT
CTCCGAGCAGTTTAGAAAGAGTGCTCTGCTGGAATCAAAGGCCCGTCTGA
AGCAGTTTCCTCACAGGGTCCTCTGGGAAGCTGACTCCCAGGCCCTCAGG
CTTGGCAAGAGTAGGCTCTGGGGTAATTAATTTCATGACCACCTCACAGA
ATTTTGTGGGAACTGTAGGTCATTTACCCCCGCCCCCCACTTAAGAAATG
TCCAAAGTCCACATGGTCTCTCTTTTTTTAAATAAATAATTTATTTAGAG
AGTTAGTTATTTATTTTATGAAATAAGTACAGTCTTCTGACACACCAGAA
GTGGGCATCAGATCCCATTACAGATGGTTGCAAGCCACCATGTGGATGCT
GGGAATTGAACTTCGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACTACT
GAGCCATCTCTCCATCATGATTTAATAATATTTTTAACATGAAGATTTTG
TGTTTGTTTGTTTGTTTGTTTGTCTTTTGAGACAGGGCTTCTCTGTATAG
CCCTGGCTGTCCTAGACCTCACTCTGTAGACCAGGCTGGTCTCAAATTCA
CAGTGCTGGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTCAAGTCCTAGACTCTTCA
TCATTTCAACTAGTCTTATGTTGGTGCCTTCATAGGCATCACTCAGACAT
TTATTCTCCTTAATTTCATTGAGCTATTTGTTTGCCTCTTCTTTAAATTC
CTTGAATTCTTTTTTGAAGCTTATGATTTTTTAAAATATGTCTCCTGGAG
CTCATCTAGGTAATTCTCATTGTCAAGCATTTCTACAGGACTGGTAAGTT
CTGGAGAGAAGATGCTGGCTCGATCTTTCATATTGTGGTATTCTTGCAAT
GAAATCTGAGCTTGTATTTTTTCTTTGCTCCCTCACACTTGGGCACTGGA
CAAGAGTAGTCTGAGTCCACAGTTCTATGTCCATAAAAAGTTAAGTAAAA
AAGTGTCTGTCTTGCCCATTTGTTAGTCTCTTGTTTGCTGTCAATTTCTC
CTTTACCCCTAAAAAAAATAAGCTTGAAGTGGAAACTTAAGGGTTCTTTG
AAAAGCCAGTTGTGTTGTAAGGTGTTTTGCTGGGTAAACACATGAGGGAG
TGCTTTCCTTTCTTTTCCACTACCTCTGGTGGGTGGCGGACTATAGGGCG
TAGGTTAAAGCATTTAAGAACCATTATTAAAAGCAGGTATTGAAAAAATT
TTAAGTTACATAAGCTTTCTTACCCCAGACACCCTGTCTGGTATATTTAC
TACCTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_a22.b1 MSMg01no330_a22.b1 CHROMAT_FILE:
MSMg01no330_a22.b1 PHD_FILE: MSMg01no330_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:42 2005
         (322 letters)



>mm_chr2_84630269_84630990
          Length = 722

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaactctgggtccctgggaaagccgggagcactctacgctgctgaactaatttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaactctgggtccctgggaaagccgggagcactctacgctgctgaactaatttg 263

                                                                       
Query: 64  ctcttcttcaaagttccccaccctctctttttctctccttcagtaagatgtggcagtgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcttcttcaaagttccccaccctctctttttctctccttcagtaagatgtggcagtgtg 323

                                                                       
Query: 124 ggtttaaaggtaccctgcctttggcttcttatctccgagcagtttagaaagagtgctctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtttaaaggtaccctgcctttggcttcttatctccgagcagtttagaaagagtgctctg 383

                                                                       
Query: 184 ctggaatcaaaggcccgtctgaagcagtttcctcacagggtcctctgggaagctgactcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggaatcaaaggcccgtctgaagcagtttcctcacagggtcctctgggaagctgactcc 443

                                                   
Query: 244 caggccctcaggcttggcaagagtaggctctggggtaatt 283
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caggccctcaggcttggcaagagtaggctctggggtaatt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)