BAC Information

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BAC

Clone NameMSMg01-330D04
Chromosome2 (Build37)
Map Location 82,926,116 - 82,926,472
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330D04.T7 (MSMg01no330_d04.b1)MSMg01-330D04.TJ (MSMg01no330_d04.g1)
ACCAG446817AG446818
length747732
length of high quality
(start - end)
357 (385 - 741)298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no330_d04.b1 PHD_FILE: MSMg01no330_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:52 2005CHROMAT_FILE: MSMg01no330_d04.g1 PHD_FILE: MSMg01no330_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCCAGTTGCTTTCTAAAATGTAATTTTTACTGGAGAATGGGAGAGA
GTGTAAGAGAGAAATATGAGCACGATATATAAAGAAAGAATACATGTACT
ACCTCTTAAATGACATCATAGTTGGCATTGCCTATTAAGACAAGAATTGT
GAGGGCAATGAGTTCTTTTCAAAACATGTCTGTGAATGAGTCCATTTATT
ATGCATTAAAGCACACACGAAGACTTATTGCAGTTATAATTGTATTTTAC
ATTTTGCTATAATTTCCTGGGAGTATCTAGAGATTTTATCAGGAACTCAA
GAACTTTATTCATTTTTTTTGCTCCCCCCGCCCAACAATAGCAGCAGCAT
TAGATATAGCCAAAAGAAAATTACACGGATATACAATATTCATAGGTGTT
TTGATGACTTGTTCAGTTAAATAAGATTCAAGAATTTAGATATGATGTAG
CATACTATAACAGTATTATAATTTTAAAGTAGGAATTTCAAAATTAACAA
TACACATTCTAATGCTATTTTACACTAAGTCAGATTCAAATATGAATGAA
TAGTACTATTCATTTATTGATACTGAGTTATTTAATATTACAAAAGATCA
AAGGATAGCCATTATAATGAAAATACAGTGAGGCCAGTTATCTTGCTACC
AGCAGTACAAGTTTACATACACATCTTGAATCTCTACTTGCTAAGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCTGTGGCTAAGGAAAGCCC
CTGAGGCCAGGTATATATAAGGAATGCCTCTGCAGGGAGGCTCCCAGAGG
CTATTGCCTGAAGCTGTGAAGCCTGGATTTTGTTGGCTATTCCCAAGATT
TTGGAAATGCTAGAGCTATGAGATACCTACTTAAGAAGGCTGCAGACCTC
ATATGAAAACATCCCCAAGGGAGAGAAGTATGTCGCTGCCAAAAACGCTG
AGAAGTATGTGAAGCATGTTTGGACTTCAGACATAGAGGTATGAAATCTG
GAGTTTGCTCTGCTGGTTTTCTGTATTTCCCCGCCCCCAGTATTCTCATG
AAGCTACCTTTACTTCCTTTTGGCATGCTAATATATATCTTCTGCTATTT
GTATGCTGGAAGGATGTGATCAGCTTTTTTATTTTGATTTTACAGGTGGG
TACAGTTGAAAACTTGCCATGAGTCTCAGACCAGATTTTGAACTTTGTAC
TTTCAAGCAGTGTTGAGATTTATAGACTATGGAGACTTTTGAAGTTGGAC
TAAATACGTTTTTATGGGAATAGAACTATGGGGACTTGGTAGTGGAATGT
GGTAGTTTAAATAAAGATAGGCCTCATCCCCTCATAGATTTGAATGCTTA
GTTCTCCAGGTAGTGCCACTCCCTTTAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_d04.b1 MSMg01no330_d04.b1 CHROMAT_FILE:
MSMg01no330_d04.b1 PHD_FILE: MSMg01no330_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:52 2005
         (357 letters)



>mm_chr2_82925916_82926672
          Length = 757

 Score =  675 bits (349), Expect = 0.0
 Identities = 355/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatagcagcagcattagatatagccaaaagaaaattacacggatatacaatattcata 60
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 557 acaatagcagcagcattagatatagccaaaagaaaattacacgggtttacaatattcata 498

                                                                       
Query: 61  ggtgttttgatgacttgttcagttaaataagattcaagaatttagatatgatgtagcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggtgttttgatgacttgttcagttaaataagattcaagaatttagatatgatgtagcata 438

                                                                       
Query: 121 ctataacagtattataattttaaagtaggaatttcaaaattaacaatacacattctaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctataacagtattataattttaaagtaggaatttcaaaattaacaatacacattctaatg 378

                                                                       
Query: 181 ctattttacactaagtcagattcaaatatgaatgaatagtactattcatttattgatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctattttacactaagtcagattcaaatatgaatgaatagtactattcatttattgatact 318

                                                                       
Query: 241 gagttatttaatattacaaaagatcaaaggatagccattataatgaaaatacagtgaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagttatttaatattacaaaagatcaaaggatagccattataatgaaaatacagtgaggc 258

                                                                    
Query: 301 cagttatcttgctaccagcagtacaagtttacatacacatcttgaatctctacttgc 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagttatcttgctaccagcagtacaagtttacatacacatcttgaatctctacttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)