BAC Information

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BAC

Clone NameMSMg01-330E02
Chromosome2 (Build37)
Map Location 33,441,253 - 33,617,387
singlet/doubletdoublet
Overlap geneLmx1b, LOC100041918, 2610528K11Rik
Upstream geneSt6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764
Downstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E02.T7 (MSMg01no330_e02.b1)MSMg01-330E02.TJ (MSMg01no330_e02.g1)
ACCAG446861AG446862
length711718
length of high quality
(start - end)
316 (37 - 352)239 (109 - 347)
definitionCHROMAT_FILE: MSMg01no330_e02.b1 PHD_FILE: MSMg01no330_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005CHROMAT_FILE: MSMg01no330_e02.g1 PHD_FILE: MSMg01no330_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,441,253 - 33,441,560)(33,617,151 - 33,617,387)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGC
AGGAGCATGGTAGGGAGCCTATGCCCAGAGGCTGCTCTGGCCCCCAGTCT
GCCTCCTCAGCCGCCCCAAACTCATGAGCGTGTGCATGTCTGTGACCACA
CATGTCTGACAAGCCCTTTGCCTAGCGTGGTCAGTCGGTGCACACAACAT
CTCATTTCTCTGGCTTACACCCATTCCCACACCATGGGAGTGTTCCCAAT
GCCGACACTGCTACTGGAACACCAGTACAATGTGTGTACATATATGTAGT
CTCTGTGCCCTCTCCTCCTGCATACATCTGCTTGCCAAAGCACACATGTT
TANCTTATTACCNTNACGTNCCCCTATAGCTTTTCAGCTTCTGGTATGTA
GCCACTGTTTAGAAAAAAAAAAAATCTACACATGCCTGCGGATCTCATGG
TGCCCCACCCTATGCACACATGCTGTACACATGGATCCCCACACATTGTC
ACAGGCCACTGATACTAGAAGTGCTTGTATGTGTGAACAGCCTGTGATTT
AACAGCTCCCAGTATGTTTTCACCCTCCTATACAGTGTCCGCACATATAT
GTGCTAATGTGTGGTCATCCCTCTCCGGCAGGTTTCCCGAGCATTTTCGT
ACCCAAAACCCATATGTGGCTTTAAACATACATTTGAGTATCTAATTTTG
TCAAATACCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTTGAGGTAGGGAATATCTCTAGTTCTTGTCTTCTTGAATGA
AACCCCCCCAGTCAAAACACAGATATTTTAAGCAGAAGTTCATTTAGCAG
AGCAAAGCCAACAGTCAGACACAGTGTGAACTGCCCCCAACATGGAATAT
AGCCTAGTGCATTCTATGATATGGATTTAAGGTTTTAGAAATATTTATGA
GGTGGCATATTCATGAGGTGATAGTGACCCTTTTCCTTCACAACTCATGA
TGGACCAGATTTTTCTTTCATGGCATTTCTTCCCATGATCCTCTATTTTT
AGCCCCTCCCACCCCACTTGAGGTCTAAACCACAATGCACATGGTATTTT
AATGGTGCCATGTCTCTCGAGCATACTGACCCTTCATTAGCGCCTGTGGA
GGACATAGCACAATCCTAGCTACAGCTTTGAAAATATTCCACCACCCCTG
CGTTTTTGCTGCCCGGTAGACTCACCCTTGTTCCTCTTCAGTCCCCCCTT
TTCCTAACTCTTTCACCTTCCATGGTCCTCATACTGTCATATGTAACCTC
ATTTCCTGACCTGGTTTTTCTTCTGACACTCTTCACAGCCACCGATGCCC
TTTAAGCTCCACTGCCCGTCTACTTCTGTTGAGCCTTCTTCCTTACATAC
GCCCCCTGTTATTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e02.b1 MSMg01no330_e02.b1 CHROMAT_FILE:
MSMg01no330_e02.b1 PHD_FILE: MSMg01no330_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:56 2005
         (316 letters)



>mm_chr2_33441049_33441764
          Length = 716

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcaggagcatggtagggagcctatgcccagaggctgctctggcccccagtct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgcaggaggatggtagggagcctatgcccagaggctgctctggcccccagtct 264

                                                                       
Query: 65  gcctcctcagccgccccaaactcatgagcgtgtgcatgtctgtgaccacacatgtctgac 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctcctcaggtgccccaaactcatgagcgtgtgcatgtctgtgaccacacatgtctgac 324

                                                                       
Query: 125 aagccctttgcctagcgtggtcagtcggtgcacacaacatctcatttctctggcttacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagccctttgcctagcgtggtcagtcggtgcacacaacatctcatttctctggcttacac 384

                                                                       
Query: 185 ccattcccacaccatgggagtgttcccaatgccgacactgctactggaacaccagtacaa 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccattcccacaccatgggagcgttcccaatgccgacactgctactggaacaccagtacaa 444

                                                                       
Query: 245 tgtgtgtacatatatgtagtctctgtgccctctcctcctgcatacatctgcttgccaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtgtacatatatgtagtctctgtgccctctcctcctgcatacatctgcttgccaaag 504

                   
Query: 305 cacacatg 312
           ||||||||
Sbjct: 505 cacacatg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no330_e02.g1 MSMg01no330_e02.g1 CHROMAT_FILE:
MSMg01no330_e02.g1 PHD_FILE: MSMg01no330_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:56 2005
         (239 letters)



>mm_chr2_33616951_33617589
          Length = 639

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcaaaacacagatattttaagcagaagttcatttagcagagcaaagccaacagtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cagtcaaaacacagatattttaagcagaagttcatttagcagagcaaagccaacagtcag 378

                                                                       
Query: 61  acacagtgtgaactgcccccaacatggaatatagcctagtgcattctatgatatggattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acacagtgtgaactgcccccaacatggaatatagcctagtgcattctatgatatggattt 318

                                                                       
Query: 121 aaggttttagaaatatttatgaggtggcatattcatgaggtgatagtgacccttttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaggttttagaaatatttatgaggtggcatattcatgaggtgatagtgacccttttcctt 258

                                                                    
Query: 181 cacaactcatgatggaccagatttttctttcatggcatttcttcccatgatcctcta 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cacaactcatgatggaccagatttttctttcatggcatttcttcccatgatcctcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)