BAC Information

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BAC

Clone NameMSMg01-330E03
Chromosome2 (Build37)
Map Location 33,639,086 - 33,639,369
singlet/doubletsinglet
Overlap gene2610528K11Rik
Upstream gene1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
Downstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E03.T7 (MSMg01no330_e03.b1)MSMg01-330E03.TJ (MSMg01no330_e03.g1)
ACCAG446863AG446864
length835767
length of high quality
(start - end)
129 (126 - 254)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no330_e03.b1 PHD_FILE: MSMg01no330_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005CHROMAT_FILE: MSMg01no330_e03.g1 PHD_FILE: MSMg01no330_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCCTATTCCCACCTCCTGCTACACACACACACACACACACACAC
ACACACACACACACACATTTTCTCCACACACACAGAGACAGGGCTAGTGT
ATGGTGTGGGTCTGACCCCAGGACAGAAACTCTGGCTAGGATATTGAAGA
TCAGAGGAGGAAGAGAAGGAGGAGGAAGAGAAGGAGGAGGAAGGGAAGGA
GTATTATAGGTTGTGGTAATTTTGATTTGTGTGTGTGGTGTTGATGGTGA
TAATGTGAGACGAAAGTTTTTTTTTGGAAAGAGAAAAAAAAACGCGCCGA
ACGGAGTTTTTAGTGGATTCCCCCCCCCCCCCCCCTGATTTTGATTATTA
TAGTATAGAGTAGGCCCCCCCCTTAAAAAAAAAAAAAAAAATAGGGTGGG
GGGGGGGGGGGACTTCACCCTTTCTGTATATTATAAAATATGTATAGATG
TAATAATATTTGGACCTAAAATCACGAACTTTCTATTAAACATTACCCCC
CTTCACTCTACCATACACCACACAAGATAACTTATTATTGAAATATTTTA
TCCAGACATTAAGTGACTGGTCAAGTTTCTGTATAATATAATTAATATCA
TGACGTTATTCTTTGCACGACTTGACCTAGTAATATCCCTTTTTACCACA
TATCACTTGTTTGCAATTCTTGCATATATTATACTACTTCTCTATTATTA
CCCTCATACTTTGTCACGCTTTGATACGGCAACCTCTTCTACCTCTATTC
TCTCTGATTCATTTGTCTCTCATATACGTGGTGTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCACACCTCCAGGGAGTGAC
CCACTTCTTCCAAATAGCGCCTTCACCCCCTGAGACTGTGCCAGACTTCT
GGGTAGGTAGGCAGGCAGGCAGGCAGGCAGAGGCAGAGAGTCTGGGCTGG
TGTTCCTCTGTTCACAGTCTAGATGGTAATGTTAGCCAAACTTGAGTCCT
TAGGTTCCAGACTGTAGCTGTAGCCCTGTTTCTCCAGGGTTTGTTTTCCT
AGCGACAGATGGAGCTCTTGGACCAGGCAGCTCTCCTGATAGCTGTCCTC
ACCCTCACTGCTCGTTTGGTCCCTTTGCCCACCCACCCATCATAGGTGCT
GGACTCAGATGGCTGAGGGTTTCCTCAGCCCTGATGAAACTGATGTGTTT
GCTGGACATGAGCTTGGCTTTCACTCCTGTAAGAAGCAAGTGCAGTGGGC
CTGGGGAGAAGGCTCAGCTGTTAAGAGTGCACACTGCTCTTACAGAGGAC
CAGGTTCAGTTCCCAGCACCTTACAGCTGCCTATAACTTTGGCTTCAGCG
GGACCCACTGCCTCTGGCCTCCTTGGATCACTGTGCTCATGTGCACATAC
CCACACACCCACATGCAGAAATACACATACTTAAAAAGTGACNAAATTTT
TATCTTTTTAAAAAAAAAAAAGAAAACCAAGAACTTAATAATAGGTCTTT
TTTCCAGACACATGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e03.g1 MSMg01no330_e03.g1 CHROMAT_FILE:
MSMg01no330_e03.g1 PHD_FILE: MSMg01no330_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:56 2005
         (289 letters)



>mm_chr2_33638782_33639470
          Length = 689

 Score =  514 bits (266), Expect = e-150
 Identities = 281/288 (97%), Gaps = 4/288 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggcacacctccagggagtgacccacttcttccaaatagcgccttcaccccctgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 588 caaggcacacctccagggagtgacccacttcttccaaatagcgccttcagcacctgagac 529

                                                                       
Query: 61  tgtgccagacttctgggtaggtaggcaggcaggcaggcaggcagaggcagagagtctggg 120
           ||||||||||||||||||||||    |||||||||||||||||||||||||| |||||||
Sbjct: 528 tgtgccagacttctgggtaggt----aggcaggcaggcaggcagaggcagagcgtctggg 473

                                                                       
Query: 121 ctggtgttcctctgttcacagtctagatggtaatgttagccaaacttgagtccttaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctggtgttcctctgttcacagtctagatggtaatgttagccaaacttgagtccttaggtt 413

                                                                       
Query: 181 ccagactgtagctgtagccctgtttctccagggtttgttttcctagcgacagatggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccagactgtagctgtagccctgtttctccagggtttgttttcctagcgacagatggagct 353

                                                           
Query: 241 cttggaccaggcagctctcctgatagctgtcctcaccctcactgctcg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttggaccaggcagctctcctgatagctgtcctcaccctcactgctcg 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)