BAC Information

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BAC

Clone NameMSMg01-330P24
Chromosome2 (Build37)
Map Location 18,018,868 - 18,019,156
singlet/doubletsinglet
Overlap geneMllt10
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik
Downstream geneLOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P24.T7 (MSMg01no330_p24.b1)MSMg01-330P24.TJ (MSMg01no330_p24.g1)
ACCAG447410AG447411
length747726
length of high quality
(start - end)
288 (73 - 360)239 (131 - 369)
definitionCHROMAT_FILE: MSMg01no330_p24.b1 PHD_FILE: MSMg01no330_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:50 2005CHROMAT_FILE: MSMg01no330_p24.g1 PHD_FILE: MSMg01no330_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGATCCGCGGAA
TTCAACAGCAGTAACATAAAATTGTAAAAGTAAAAGGGAAAGACTGGCAA
GATGGTTCAGCAAGGCTTTTGACCCGAGATCCTATCTCTGGAAACCATGT
AAATATGAAAAGATAGAACTCCATAAATTGTCCTCTGGCTTCTACATGCT
TGCTGTGGCATCCCCACCATATGTGTCCAACACACAAATAGTAAGTAATA
ATGACGGTGATGACAACAATAAACAAAGTGAGCCATTCAAGACAGCTCAT
GAGTAAAGGTACCTGTCACCAAACTTCACAACCTGAAAAAAATCAAGCCA
ACCATTAGCCCCACTTTTCTAACACAACCGACTCCCAGCCTGGTGTGGTG
GCGCACGCCTTTAATCCCAGCACTCGAAAGACAAAAGCAGGCGGATTTCT
GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACATCCAGGGC
TACACAGAGAAACCCTGTTTTGAAAAAGAAAAAAGCAAAAACAAAACAAA
GAGTCTAGAAGATTCGTCAGTAAAATGGTTGCATTGCAAGTGGAAGGATC
TGAGTTCAGATCCCCAGTATCCCTGTGAAACATGATGGGTGTGCAGCACA
CCTTTAGTCCCGACACGCAGGAGGCAGCGGCAGCCAGATCTCTCCATTCC
AGCTTGGTCTACATACTGAGTTCCAGAACAGACAGAGCTACATAGTG
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATTCCTTGATTATTCATTAA
AGAGAGTTTTACTAAACCCTCTCTACTCCATATAGTGAATATAGGAATTG
AAGAAAAACATTACAGTTTGTGAGTGTGTGCGTGTGAATATGTTTATGAA
TGTGTGTGTGTTGAGTGTGCTTATGAGTGTGTGAGTCTGTGTGTGTTTAT
AAGTATGTGCGTGCATATGAAAATGTGTGTTTGTATTTGTGTATGAGTGT
TACTGTGTGTGTGTGTGTGTGAGTTTGTGTGTCTGTGTATGAGTTTGTGT
GAGAGTGTATGTGTTTGTTTTTCTGATGCCCCACCTCCTTCCAGCCTCTT
TTCTTCGTATAAAACTGGTGTGAATCATCTTAGTAACTTTCACTTTACAC
TTAAGGAATGTCCTCCTCATGTTACAGAGAGAGTTATAAAATCAGAGCCT
CACGTTAAATTTTACTGGATGATAAATCCATTAAAAATGATACGACTCAG
AGCTGTCTCCCCATTAATCCCAGCATTAGGGAGGCAGGAGCAGGCTAGAG
TTTGTGAGTTCAAGGCCAGCCTGGTCTACATAGTAAGTTTGAGACCAGCC
AGAGATCTTAAGGACAAGAAAAAAGGGTGGGGGGGGAGGGCAGGTGAAAG
ATAACCTTAAATTCTTCTATAAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p24.b1 MSMg01no330_p24.b1 CHROMAT_FILE:
MSMg01no330_p24.b1 PHD_FILE: MSMg01no330_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:50 2005
         (288 letters)



>mm_chr2_18018530_18019218
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaaagtaaaagggaaagactggcaagatggttcagcaaggcttttgacccgagatcc 60
           |||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||||
Sbjct: 627 tgtaaaagtaaaagggaaagactggcaagatggttcagcaaggctggtgagctgagatcc 568

                                                                       
Query: 61  tatctctggaaaccatgtaaatatgaaaagatagaactccataaattgtcctctggcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tatctctggaaaccatgtaaatatgaaaagatagaactccataaattgtcctctggcttc 508

                                                                       
Query: 121 tacatgcttgctgtggcatccccaccatatgtgtccaacacacaaatagtaagtaataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tacatgcttgctgtggcatccccaccatatgtgtccaacacacaaatagtaagtaataat 448

                                                                       
Query: 181 gacggtgatgacaacaataaacaaagtgagccattcaagacagctcatgagtaaaggtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gacggtgatgacaacaataaacaaagtgagccattcaagacagctcatgagtaaaggtac 388

                                                            
Query: 241 ctgtcaccaaacttcacaacctg-aaaaaaatcaagccaaccattagcc 288
           ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 387 ctgtcaccaaacttcacaacctgaaaaaaaatcaagccaaccattagcc 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)