BAC Information

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BAC

Clone NameMSMg01-331B18
Chromosome2 (Build37)
Map Location 32,860,599 - 33,021,853
singlet/doubletdoublet
Overlap geneGarnl3, Ralgps1
Upstream geneNup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8
Downstream geneAngptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331B18.T7 (MSMg01no331_b18.b1)MSMg01-331B18.TJ (MSMg01no331_b18.g1)
ACCAG447491AG447492
length795818
length of high quality
(start - end)
249 (70 - 318)211 (79 - 289)
definitionCHROMAT_FILE: MSMg01no331_b18.b1 PHD_FILE: MSMg01no331_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:58 2005CHROMAT_FILE: MSMg01no331_b18.g1 PHD_FILE: MSMg01no331_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,860,599 - 32,860,845)(33,021,643 - 33,021,853)
sequence
CCATCTAGXXXXXXXXXXXXXXXXXXXXXXXXCTATTGCGTAGAATCCGC
GGAATTCCTCATTTTCGCACTCCGACAGGGGAGACAGGAGTGAGACACCT
GGCACCCCACTTGGCTTGTTGTGTGGTTTCCTTGTGATGAGAAGCAGTTT
ATTGCGAATTGCAACCACGATTCTCAGCTCTCTGCTGTGGTGAGTATTAA
TAGCATACAGGTGGCATCCTGGGAAGAGGAAAGATGACATTCAACATGAG
CAGGGAGGGTGGGAAGGCCCCAGGCTGGGGACTTTGGGAACGGTTCCTAA
GAATCCTGGGACTGAATTTTTTCTCAGAGATAGACAATGTTTTGGATGCC
CGGCGTTGTGTTGCTCAGCTTGAAACACCTCTTCCCTGTTCTTGAGTTAG
TATTATTGTTTTTTTCCCCCCCCGCGGGGTTTTTTTATATTTGTCTCCCC
TTTTCACTTATACATCTTCCCTTGCTATTTTGTTTTTCCCTTTTTCATCC
TCTTGTTTTCCTACTTTCTTCTATATTTTTTATTCACCTCTTTCTTATTC
CTTTTCTTCACCTTTTTTTTTTTTTTTATTATTTTCTCCTTCCTTATCCT
ATCTAACTCACCTTTTCCATTATATTCCCTCTATCCACCCATTTCTTCTT
TTTATCTCCTTTCTTTTTTTTCCCTTTTTCCCCTTTTTTTTTTTTCCTTT
TCATTTTTTTCTTTTACCACTTATTTTTCATTTTTCTTCTCTATTCTTCT
CCCCTTTTTTCTTTCTTCCTCTCTCTTATTTTCTCTGCCCCTCTG
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGGCTGGCATAGACTTCT
GGGAGAATCTGATGCCACACATTCAGCTCTAGCCTCAGAGTTCCTTGTTG
GGCCCTGTGGACACCTGTCCTTGAGGGCTGGCTGCTGACTCTGCACAACC
TTCCAGAAAAGTGCTGAGCCCAGCAGTTCCTGCACGGCAGAGGGAGTTCA
GCTCACAGGACTGTTTTCCACCAACTTTCCGAATCCCTGGTTTCAGTCCC
AAAGCAGCATGTCAGGGTTTATGTTTATCAGTACAGAGTCAGTGATTTTC
TACACAGTTCATTACCATTCCTCACCCCCGCCTTTTTCCCCGCAACGTCC
CATTTTTTTAATTTTTTTCCCCCCCCTTTTTTTGTATTTGTTATTTTCAT
TCTCCCCTCTGTCGCCTTTTTATTTCTCCTCTTCTATCTACCTTTTTTCT
TCCCTCTTTTCTCTTCTCCTTTTTCTTTTTTTACCTTTTCTTTTTTCCCC
CTTTTCTTCCCTCCTTTCTCCCTCCCCCTTTTCTCCCTTCCCTCCTCCCT
TACTCTTTTTCTTTATTACTTTTTCCCCTCCCCTCCATCTCTTTTTACTC
CTACTTTTTTCTCCACCCCCACTCTTTTTTTTTCTTCCTCCATTTTTTTT
TCTTCCACCTCTTTTCTTCTATTTTTTTTTTATTCCTCCTTCTTTCTCCC
CCTCTTGTTCCCCTTTTCTTTGCTCACCCCTCTCTTTTATATATAATATT
ACTCTCCTCTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_b18.b1 MSMg01no331_b18.b1 CHROMAT_FILE:
MSMg01no331_b18.b1 PHD_FILE: MSMg01no331_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:58 2005
         (249 letters)



>mm_chr2_32860399_32861047
          Length = 649

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccgacaggggagacaggagtgagacacctggcaccccacttggcttgttgtgtggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccgacaggggagacaggagtgagacacctggcaccccacttggcttgttgtgtggttt 260

                                                                       
Query: 61  ccttgtgatgagaagcagtttattgcgaattgcaaccacgattctcagctctctgctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttgtgatgagaagcagtttattgcgaattgcaaccacgattctcagctctctgctgtg 320

                                                                       
Query: 121 gtgagtattaatagcatacaggtggcatcctgggaagaggaaagatgacattcaacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgagtattaatagcatacaggtggcatcctgggaagaggaaagatgacattcaacatga 380

                                                                       
Query: 181 gcagggagggtgggaaggccccaggctggggactttgggaacggttcctaagaatcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggagggtgggaaggccccaggctggggactttgggaacggttcctaagaatcctgg 440

                  
Query: 241 gactgaa 247
           |||||||
Sbjct: 441 gactgaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no331_b18.g1 MSMg01no331_b18.g1 CHROMAT_FILE:
MSMg01no331_b18.g1 PHD_FILE: MSMg01no331_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:58 2005
         (211 letters)



>mm_chr2_33021443_33022053
          Length = 611

 Score =  377 bits (195), Expect = e-109
 Identities = 207/211 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaggctggcatagacttctgggagaatctgatgccacacattcagctctagcctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctagaggctggcatagacttctgggagaatctgatgccacacattcagctctagcctcag 352

                                                                       
Query: 61  agttccttgttgggccctgtggacacctgtccttgagggctggctgctgactctgcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agttccttgttgggccctgtggacacctgtccttgagggctggctgctgactctgcacaa 292

                                                                       
Query: 121 ccttccagaaaagtgctgagcccagcagttcctgcacggcagagggagttcagctcacag 180
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct: 291 ccttccagaaaagtgctgagcccagcaattcctgcacagcagagggagttcggctcacag 232

                                          
Query: 181 gactgttttccaccaactttccgaatccctg 211
           || ||||||||||||||||||||||||||||
Sbjct: 231 gagtgttttccaccaactttccgaatccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)