Query= MSMg01no331_h09.b1 MSMg01no331_h09.b1 CHROMAT_FILE:
MSMg01no331_h09.b1 PHD_FILE: MSMg01no331_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:22 2005
(635 letters)
>mm_chr2_22829339_22830373
Length = 1035
Score = 795 bits (411), Expect = 0.0
Identities = 435/443 (98%)
Strand = Plus / Minus
Query: 1 ggtggctattgcttgtaatcccataagttaggaggcatggaagaagggttgctctaagtt 60
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 714 ggtggctagtgcttgtaatcccataagttaagaggcatggaagaagggttgctctaagtt 655
Query: 61 tgagttggtcagtgtgggttgtagtataatacccctcctttaaaagacagaacaggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgagttggtcagtgtgggttgtagtataatacccctcctttaaaagacagaacaggaaaa 595
Query: 121 ttttagattgtttagtagaattagagctaacattaagagctttctagataactggaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttttagattgtttagtagaattagagctaacattaagagctttctagataactggaatct 535
Query: 181 agtttcataggttccggttatgttcatcagcattttgatacctgcctgtagcaataaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agtttcataggttccggttatgttcatcagcattttgatacctgcctgtagcaataaaag 475
Query: 241 tcaatatgctgaggggttttgtcaaggacatttcttccagtggaacctctcacaggatag 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcaatatgcagaggggttttgtcaaggacatttcttccagtggaacctctcacaggatag 415
Query: 301 ccttctgtaaaaacatgcttgatgtgccttatctcatctccaaaggactgattgttaata 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 414 ccttctgtaaaaacatgcttgatgtgccttatctcatctccaaaggactgattgttaaga 355
Query: 361 aagtagactgggaggatctgagaaccagcatagtattgctgctccttcctttctttcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 354 aagtagactgggaggatctgagaaccagcatagtattgctgctccttccttccttccttc 295
Query: 421 cttccttcctttcttccttcctt 443
||||||||||| |||||||||||
Sbjct: 294 cttccttccttccttccttcctt 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_h09.g1 MSMg01no331_h09.g1 CHROMAT_FILE:
MSMg01no331_h09.g1 PHD_FILE: MSMg01no331_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:22 2005
(630 letters)
>mm_chr2_22665506_22666535
Length = 1030
Score = 1091 bits (564), Expect = 0.0
Identities = 605/630 (96%), Gaps = 19/630 (3%)
Strand = Plus / Plus
Query: 1 agtgcttatgctgtcattgaggacaggaagtcagggtgactggaagctggacgagcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcttatgctgtcattgaggacaggaagtcagggtgactggaagctggacgagcagat 260
Query: 61 agatgaagctttcagctatggccacgcagtaagaatgagagaagaaaacatccactggaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agatgaagctttcagctatggccacgcagtaagaatgagaggagaaaacatccactggaa 320
Query: 121 aatccaacaggattttctgactcgccaggtgggaaaatggaagagaagaggatcatacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatccaacaggattttctgactcgccaggtgggaaaatggaagagaagaggatcatacca 380
Query: 181 acttctaactcagactaatgagtgacaaatggtcacccgccaaacctggagtgttggggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttctaactcagactaatgagtgacaaatggtcacccgccaaacctggagtgttggggt 440
Query: 241 tgcagaagaagaaatagtgagtgggagcggtttgcatggaaatgcccgagggtctttaaa 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tgcagaagaagaaatagtgagtgggagcagtttgcatggaaatgcccgagggtctttaaa 500
Query: 301 atggcttctatgggcaggtaggataatggctgctctgacttgacccaaaatcatggcagc 360
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 501 atggcttctatgggcaggtaggataatggctgctctgacttgattcaaaaccatggcagc 560
Query: 361 atttactaagtaaacaacaatgaagactgcattcaaactgaattaaatgtgtgaagttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttactaagtaaacaacaatgaagactgcattcaaactgaattaaatgtgtgaagttaa 620
Query: 421 tctaagtatatgtcctgttgaacatatatatatatatatatatatatatataaacatagt 480
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 tctaagtatatgtcctgttgaacatatatatata------------------aacatagt 662
Query: 481 acttggattttcaaatatatgtaattgaagtttatttatgtgaaaaagaaaaggtctttg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 663 acttggattttcaaatatatgtaattgaagtttatttatgtgaaaaagaaaaagtctttg 722
Query: 541 gggtcaatacctgaagcttgagtttgaagctgaagagattagttgagcattaggaaaatt 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 723 gggtcaatacctgaagcttgagtttgaagctgaagagat-agttgagcattaggaaaatt 781
Query: 601 ccatggccactgagaaacgtcagtttagcc 630
||||||||||||||||||||||||||||||
Sbjct: 782 ccatggccactgagaaacgtcagtttagcc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
