BAC Information

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BAC

Clone NameMSMg01-331H19
Chromosome2 (Build37)
Map Location 130,289,351 - 130,289,735
singlet/doubletsinglet
Overlap genenone
Upstream geneF830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
Downstream genePtpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331H19.T7 (MSMg01no331_h19.b1)MSMg01-331H19.TJ (MSMg01no331_h19.g1)
ACCAG447771AG447772
length752728
length of high quality
(start - end)
705 (43 - 747)59 (236 - 294)
definitionCHROMAT_FILE: MSMg01no331_h19.b1 PHD_FILE: MSMg01no331_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:23 2005CHROMAT_FILE: MSMg01no331_h19.g1 PHD_FILE: MSMg01no331_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGGTTGAATTCCAAAAGTCTCTCTCTCGCTTTTTTTTATTCAATTTGTC
TTTTATTATTATTTTTAAGCAGTTTTGGTGAGGTATTCTAGTTGGTTTCT
GTTGCTGTGATAAAACATTCTGGCCAAAAGAAACTTGGAAAGGAAAGGCT
TTATTTAGCTTACACATTCTCAGTACAGTCCATTGCTGAGGGAAGCCAGG
AAAAAGACTCAGGCAGGAACCTAGAGGCAGGAAGTGAAGCAGAGGCTATG
GACGAATGTTGCTTTCTAGCTGGCTTTCCATGGCTTGGCCAGCTTGCTTT
CTTGGATAGTTCTTGTTAGTTCTTTTTTACATATAGTAAATTGCTCTCCT
GAGGATAGAGGTATGCACCTTACTTGTTTTACAGGGTTTTTTAAAGGTTT
TTTTTGTTTGTTTTCAATTTATCTCAACTCTTATATGCTATTTAGTAGGT
GTGAGTGAGTGGTTTACTCCAGTAGAACCATATTGACCCCACCCCCACCC
CCCACTCTGAGCACTGTAAGATAAGTGAGCTAGCATTCTTAACTTTTTCT
TAGTTAAGATTTCTCTCAGTAGCCCAGGCTGGCCCAGCACTCAAGGTCTT
GGCTGCCTCAGCCTCCCTAGTGCTAGGATTACAGGTATGAGCCTCCTGGC
TTGAACCAATACTCCTAAAGGAGGCAGCATGACCTAACAAGCATGTGACC
TC
TAGGGGAGGCTGGGGGCGCTGGTTTCCCAACCGCAGAACNAAGAAGGATT
GCGNCACCAGGGAGACAGGCCGCCNNGACCCGAGAGACNACCGGTTTTAC
CCCCCAGAGCNAAGANAAAGGNGGCACCCCAGGNCGGGNNNANAAAGNAA
ANNNAAAAGGNNNCCNAGACNANNACNNNNANGNGNAGGACGGNNNNGCC
NGAANGNANGNGNACGCACGGNANACTTGTTTAGNGCCCACAGAAGCCAG
AAGAGGGCATAGATTCCCTTGAACAAACAAACAAACAAACAATTTTTTTT
TTTCTGAAAAACCAAGAAGACAAAAACAAACAAACAAAGCCACCCCCCCC
CCCCNGACAGAGAACNGGAGCACAGGCCNACANCAGGGGGCGCCCACCGG
AAGACGAAGAGCCCAAGACCGGNGCGGACCNCACGAAACCCGGCCCGAAA
AAGGCCAANACAGACAAACAGAAAGGACGACAGAGGCAGNCNGGCCAACA
GCAAACAGAGGGCCCGCCACCCACCGACGCACCCNNCCACACCGACAGCN
CCCACCACAACCAACCAGCGGCCNGNAGCACGCGACCGCGAACCCCCCCC
ACAACGAGCCACACAAGAAACACCACGCGCCTTTTTTTTTTTTTTTTCTG
AACTAGCCACTCACCTTTGCCGGCATATTCATCCCCTACATCACACGTCC
GCCCAGACCACTTGTTTCTTTATCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_h19.b1 MSMg01no331_h19.b1 CHROMAT_FILE:
MSMg01no331_h19.b1 PHD_FILE: MSMg01no331_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:23 2005
         (705 letters)



>mm_chr2_130288831_130289935
          Length = 1105

 Score =  698 bits (361), Expect = 0.0
 Identities = 379/385 (98%)
 Strand = Plus / Plus

                                                                       
Query: 321 ttgttagttcttttttacatatagtaaattgctctcctgaggatagaggtatgcacctta 380
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 521 ttgttagttcttttttacatatagtaaattgctctcctgaggatagaagtatggatctta 580

                                                                       
Query: 381 cttgttttacagggttttttaaaggttttttttgtttgttttcaatttatctcaactctt 440
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 581 cttgttttacagggttttttaaagtttttttttgtttgtttccaatttatctcaactctt 640

                                                                       
Query: 441 atatgctatttagtaggtgtgagtgagtggtttactccagtagaaccatattgaccccac 500
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atatgatatttagtaggtgtgagtgagtggtttactccagtagaaccatattgaccccac 700

                                                                       
Query: 501 ccccaccccccactctgagcactgtaagataagtgagctagcattcttaactttttctta 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ccccaccccccactctgagcactgtaagataagtgagctagcattcttaactttttctta 760

                                                                       
Query: 561 gttaagatttctctcagtagcccaggctggcccagcactcaaggtcttggctgcctcagc 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gttaagatttctctcagtagcccaggctggcccagcactcaaggtcttggctgcctcagc 820

                                                                       
Query: 621 ctccctagtgctaggattacaggtatgagcctcctggcttgaaccaatactcctaaagga 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctccctagtgctaggattacaggtatgagcctcctggcttgaaccaatactcctaaagga 880

                                    
Query: 681 ggcagcatgacctaacaagcatgtg 705
           |||||||||||||||||||||||||
Sbjct: 881 ggcagcatgacctaacaagcatgtg 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)