BAC Information

Click to search

BAC

Clone NameMSMg01-331M15
Chromosome2 (Build37)
Map Location 142,653,755 - 142,654,373
singlet/doubletsinglet
Overlap geneKif16b
Upstream geneLOC668913, LOC668914
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331M15.T7 (MSMg01no331_m15.b1)MSMg01-331M15.TJ (MSMg01no331_m15.g1)
ACCAG447996AG447997
length772736
length of high quality
(start - end)
173 (49 - 221)619 (66 - 684)
definitionCHROMAT_FILE: MSMg01no331_m15.b1 PHD_FILE: MSMg01no331_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:45 2005CHROMAT_FILE: MSMg01no331_m15.g1 PHD_FILE: MSMg01no331_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTACTTCGAGAGAGATCCGCGGAATTCTTTGTTTTGCCATGAGCC
CCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTT
CTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAG
ATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTT
TGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCG
ATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTG
TCTATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAACTTCCAGTGT
CTCCGTTTACATGTGACGTTCCTTGATACACTTAAATTTGCCCCCCCCCC
TTTTATATTTGTACGGATCGATTCGCACTCTTCTACTCGATCATTTCATT
TGTGTCATCTTATTTTCGTTTGACCTGCTGCCTTTTTCCCTATTGTTGCT
TTTATCTTCCTTGTTCTAACATCTTCGCTCCTTTCCGCGCTTTTTCCATT
TTCTCTATCTCCCATATTTATTTTTTCCGTTCCCTTTTCTTTTCTCCTTA
TCCTCCACCTTTTCGCTCCTCCCATTTCAACTATTCCATCCTTTCCCCCT
ATTTTTCTTTCCTCTCTTTCCTCTCCCTTTTCCTCCCGTTTACCCATCCC
TTTTTCTTCTTTTGCTTCCACTATTACTCCTTAACTTCTACTCTNGTACT
TCTCCACCCCTTTTCTTCTTTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTTTCATCCCAATACCCCATGCCTCCTTCTTAC
TTTTTGGTTTATCAGCTTTGTATACATTTGTTTCTCTGTCCCAGAGTTAA
AGAAAAATGCCCAAGCTATGTTATCCAACTTTCAAAGAGCTCCTTGAGCT
CTGTGCTTCAAAATGAGCCCCAGACAGTTAGGGCTACAGCACATAGCTAG
TCGCTGTGTGGCAGACGGTGTGGTAGGAGAGAACATGTGTGTCTGGAGCC
ACGCTACAGCCAGGGACTTACAGCCAGGTAGTGCTCCTGGTTGACTCCCT
ACAGCTTTGGTTATTCTTCTTGCTTTTCTACAGACTACATGCTTTTCTTG
TTGTAGACATAGCCTTTGATCACTCCAGTGTCTTTCTGGATTTTGTATTT
TCTCTGCCTCACGTAGAGCTTCTAGCTGTGTCAGGGAATAAGCAGGTTGC
TTTTACACAGACTCCCACACTGGTAGTTTCCTTGAAACGTGTACTAATTG
CATAACAGTACCTTGAAGTTTTTGTTTTTTTGTTTTTTGTTTTTATTAAG
GGGAATTATTGTGTATCTTATGCCCAGTTGGTGTTTGCTCTGCTGAATGT
AGTAGCTGGGCCATATGTGAACCCACATGAATATGGGATCAGAATGCAAA
CAGTTTAATTTTGAATTGTACTGGTGGCTCACTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_m15.g1 MSMg01no331_m15.g1 CHROMAT_FILE:
MSMg01no331_m15.g1 PHD_FILE: MSMg01no331_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:45 2005
         (619 letters)



>mm_chr2_142653555_142654573
          Length = 1019

 Score = 1174 bits (607), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttcatcccaataccccatgcctccttcttactttttggtttatcagctttgtatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ctttttcatcccaataccccatgcctccttcttactttttggtttatcagctttgtatac 760

                                                                       
Query: 61  atttgtttctctgtcccagagttaaagaaaaatgcccaagctatgttatccaactttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atttgtttctctgtcccagagttaaagaaaaatgcccaagctatgttatccaactttcaa 700

                                                                       
Query: 121 agagctccttgagctctgtgcttcaaaatgagccccagacagttagggctacagcacata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 699 agagctccttgagctctgtgcttcaaaatgagccccagacagttagggctgcagcacata 640

                                                                       
Query: 181 gctagtcgctgtgtggcagacggtgtggtaggagagaacatgtgtgtctggagccacgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gctagtcgctgtgtggcagacggtgtggtaggagagaacatgtgtgtctggagccacgct 580

                                                                       
Query: 241 acagccagggacttacagccaggtagtgctcctggttgactccctacagctttggttatt 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 579 acagccagggacttacagccaggcagtgctcctggttgactccctacagctttggttatt 520

                                                                       
Query: 301 cttcttgcttttctacagactacatgcttttcttgttgtagacatagcctttgatcactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 519 cttcttgcttttctacagactacatgcttttcttgttgtagacatagtctttgatcactc 460

                                                                       
Query: 361 cagtgtctttctggattttgtattttctctgcctcacgtagagcttctagctgtgtcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cagtgtctttctggattttgtattttctctgcctcacgtagagcttctagctgtgtcagg 400

                                                                       
Query: 421 gaataagcaggttgcttttacacagactcccacactggtagtttccttgaaacgtgtact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaataagcaggttgcttttacacagactcccacactggtagtttccttgaaacgtgtact 340

                                                                       
Query: 481 aattgcataacagtaccttgaagtttttgtttttttgttttttgtttttattaaggggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aattgcataacagtaccttgaagtttttgtttttttgttttttgtttttattaaggggaa 280

                                                                       
Query: 541 ttattgtgtatcttatgcccagttggtgtttgctctgctgaatgtagtagctgggccata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttattgtgtatcttatgcccagttggtgtttgctctgctgaatgtagtagctgggccata 220

                              
Query: 601 tgtgaacccacatgaatat 619
           |||||||||||||||||||
Sbjct: 219 tgtgaacccacatgaatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)