BAC Information

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BAC

Clone NameMSMg01-332B01
Chromosome2 (Build37)
Map Location 36,587,109 - 36,587,919
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346
Downstream geneOlfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332B01.T7 (MSMg01no332_b01.b1)MSMg01-332B01.TJ (MSMg01no332_b01.g1)
ACCAG448196AG448197
length1,2531,243
length of high quality
(start - end)		525 (124 - 648)816 (91 - 906)
definitionCHROMAT_FILE: MSMg01no332_b01.b1 PHD_FILE: MSMg01no332_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:08 2005CHROMAT_FILE: MSMg01no332_b01.g1 PHD_FILE: MSMg01no332_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNCCCGTCTTTTGGNNTTACTCGGCGCTTAGACTCCTATGGGTGTGGAC
CGCGGAATTCCAGCAATTTTGGCATCCCACACGATTTCTCTAGCTTCTTT
TCTAGTTAATGCAAAGCGTCGGCGTAAAGTTTCAGCTGTCACATGAAAGC
GCTTGTGAAACTCTTTTGCAGCTCCTGCCTGGGAAGACAGAGCAACGGCC
ACCGTGGCTTTATCCGCCTAGAGACGTAGGACTAGGGGGGCCCAAATGCG
CTCTGACATGGGTGATATAAATGGGGAACTTTCTATTTAATAAGGCAAAT
TGTATTTGTTGAAAAATGTTGGCGACTCTACTGGAGGGTTTTATTACCCC
AGCTGTCTCAAGAAGATTAACTGCATTAACTACATAGGAAGAATCAGACA
CAATATTAAGCGGTCCTGGGAAGGCCTCAGGAACCTCCAGTACCACTAAA
CATTCCACAACTTGAGGTGAGGTTTCATTATATTGCTTAGATACTACCTT
ACCATTAACCACATAAGCACCTATACCAGTTTTTGATCCATCAGTGTACA
CTACAATCCCATCTGTGAGTGGATTCTTGGCTGTTACTTGTGGAAACACT
ATAGCCTGACTCAGGGCAAACTGTAAGATTGGACGCTTTGGGTAATGATT
GTCAATCTGTCCTGAAAAGGAGGTGACTAAAATTGCCCAATCATTAGATG
TAGCTGCCAAGGTCTGAACTTGTACAGAGGTATATGGTACAATCAAAAGA
TAAGGTTCTTTTCCAAAATAAGTAATAGCTGCTTTTAACCCTCGAAGTTT
TGTGGCCCATTTTGCCACAAAACTGCTGTTGGNCATTGGGCTGGCTTAAA
ATACACAAGTCAAAAAGCTGTGACTCATCAATGCGTTGCAATTGAGCCTC
CTGCAAGGCATTTTCTACTATTGTAAAGCCTGACCACCAACGCGGTAAAT
GCCCTGCGGGAGAAGATGAGAGGACCTCCTTCCGCATATCAAATAAAGCT
TTATTCTGCCGATGAAATTTTCAAATGGGCTCCACCATTTAATTCCCTAC
CATTTCTGAAATCATTAGGGAGGAAAAGAACCCGCAATTTTACTTCTGCG
GAAAAACTTTCCGAAAATGATGACCCAAAAGTCCCCCTGCCATTGGCCCT
TTTGTGGTAAGGAACCCATGTTCAGGTCAACAAAGTTCCAGCTCAAAACT
ACAACCGGACTGCCTTCAGGATGTGCGGCCTGGCCGTAAAAAGTCTAAAT
GTG

NNCCCGTTTATTTNNNNNAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATAATGTTTTCCCAT
ACTGTTTTAAACAGGACCAAATGATGAGGACTTGTTTTAGTTGCTACCAT
TGTTTTTCAAAGATGAAGGGACTCTCAAGCTTGCTTCAAAATAGTTCTTT
CCCTAAGGGAGTCGAAGACAACATAACAATTTTATCCTGTATGCCTCTAA
TTTGGATCTGGGGACAGGGATTGTGCCCTAGGTTTTCTACATGATTTTCA
AAATTATAACTCACACAGACTTCCCAGGAGACATGGGCAGTATACATGTT
CATATATCTGCCATATCTGATTTTGAACTGATTACTATTCTGATTCTTGC
AATGGACCTATGACTGCTTCAGATGATCCAGCACTTTCCCTTCTTCTTAC
CTAAAGGTATCTGAGTTCATCCTATAAGTTAGTCTGCTGGATCAGGCATA
GAATATATACACATCTTTATTACTGGATATGTTTGGGTGCCACTATGTCT
CACTGTCTGTCTCTGTTTCTGTCTGTCTCTGTCTGTTTTTCTCTGTGTCT
GATCAGCATGCATTTCAAATTGTAAGAATCATACTTTCAAAAACAAACAG
TTCTCTACAGAATGATTTATCTTGCATTGAGAACTTTTAAGATAAAAGAA
CATTCCCTCCCTCAAAATAAAACAAAACAGAACAAACAAAACAAAAACAA
AATTTAAAAAAAAAATCCGACAATAGAATATGTTTCTTAAGTTTATCCAT
TTTTTGTTTGTTTTGTTTTTTATTATTTTATTTATTTACATTTCAAATAT
TGTCCACCTTCCTATTCACTCCTCCACTAACACTCTATTTCATCCCCATT
GCCTCTAAGAAGGTGCTCACCCACAGAGCTCTGACAGGGACAGTATTACT
CATGTTTGAAATAAAGCAAGAAAATCATCTTCTTTGNTCACATTGAAACT
TCACACACNATTTTTGTGTGTTTTCTTCCACTTTCTCCAAATATCTATGA
CTTTTACCATTGTGGCCTTGATGNTCATATGGCCGNTAGNATCCTTTAAT
TCTTTCAACCACTTTCTAACTGGGAAGCCAGGGGGCCATTTCCAAATTTT
TGAACACTTATTTTCTTGGATTTTTTATTTTTGAACAGAAGGAAATTTCC
CTCCCCACAAAATATAAATTAAATCGCCCGGGGGGCCCAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_b01.g1 MSMg01no332_b01.g1 CHROMAT_FILE:
MSMg01no332_b01.g1 PHD_FILE: MSMg01no332_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:08 2005
         (816 letters)



>mm_chr2_36586909_36588123
          Length = 1215

 Score = 1392 bits (720), Expect = 0.0
 Identities = 791/818 (96%), Gaps = 9/818 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttttcccatactgttttaaacaggaccaaatgatgaggacttgttttagttgctaccat 60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201  gttttcccatactgttttaaacaggaccaaatgatggggacttgttttagttgctaccat 260

                                                                        
Query: 61   tgtttttcaaagatgaagggactctcaagcttgcttcaaaatagttctttccctaaggga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261  tgtttttcaaagatgaagggactctcaagcttgcttcaaaatagttctttccctaaggga 320

                                                                        
Query: 121  gtcgaagacaacataacaattttatcctgtatgcctctaatttggatctggggacaggga 180
            ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  gtcaaagacaacatgacaattttatcctgtatgcctctaatttggatctggggacaggga 380

                                                                        
Query: 181  ttgtgccctaggttttctacatgattttcaaaattataactcacacagacttcccaggag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  ttgtgccctaggttttctacatgattttcaaaattataactcacacagacttcccaggag 440

                                                                        
Query: 241  acatgggcagtatacatgttcatatatctgccatatctgattttgaactgattactattc 300
            |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 441  acatggacagtatacatgttcatatatctgccatatctga-tttggactgattactattc 499

                                                                        
Query: 301  tgattcttgcaatggacctatgactgcttcagatgatccagcactttcccttcttcttac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500  tgattcttgcaatggacctatgactgcttcagatgatccagcactttcccttcttcttac 559

                                                                        
Query: 361  ctaaaggtatctgagttcatcctataagttagtctgctggatcaggcatagaatatatac 420
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 560  ctaaaggtatctgagttcatcctataagttagtctactggatcaggcatagaatatacac 619

                                                                        
Query: 421  acatctttattactggatatgtttgggtgccactatgtctcactgtctgtctctgtttct 480
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620  acatctttattactggatatgtttgggtgccactatgtctcactgtccgtctctgtttct 679

                                                                        
Query: 481  gtctgtctctgtctgtttttctctgtgtctgatcagcatgcatttcaaattgtaagaatc 540
            ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 680  gtctgtctctgtctgtttttctctgtgtctggtcagcatgcatttcatattgtaagaatc 739

                                                                        
Query: 541  atactttcaaaaacaaacagttctctacagaatgatttatcttgcattgagaacttttaa 600
            |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 740  atactttcaaaaacaagcagttctctacagaatgatttaccttgcattgagaacttttaa 799

                                                                        
Query: 601  gataaaagaacattccctccctcaaaataaaacaaaacagaacaaacaaaacaaaaacaa 660
            |||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 800  gataaaaggacattccatccctcaaaataaagcaaaacagtacaaacaaaacaaaaacaa 859

                                                                        
Query: 661  aatttaaaaaaaaaatccgacaatagaatatgtttcttaagtttatccattttttgtttg 720
            ||||    ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 860  aatt----aaaaaaatccgacaatagaatatgtttcttaagtttatccactttttgtttg 915

                                                                        
Query: 721  ttttgttttttattattttatttatttacatttcaaatattgtccaccttcctattcact 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ttttgttttttattattttatttatttacatttcaaatattgtccaccttcctattcact 975

                                                  
Query: 781  cctccactaacactctatttc--atccccattgcctct 816
            |||||||||| |||||||  |  |||||||||||||||
Sbjct: 976  cctccactaatactctat--cctatccccattgcctct 1011


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 816
Length of database: 1215
Length adjustment: 10
Effective length of query: 806
Effective length of database: 1205
Effective search space:   971230
Effective search space used:   971230
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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