Query= MSMg01no332_f16.b1 MSMg01no332_f16.b1 CHROMAT_FILE:
MSMg01no332_f16.b1 PHD_FILE: MSMg01no332_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:43 2005
(510 letters)
>mm_chr2_157195016_157195925
Length = 910
Score = 940 bits (486), Expect = 0.0
Identities = 504/510 (98%)
Strand = Plus / Plus
Query: 1 aactgcagcgtcttcttgaaaggttttattaactgaagtttttagggtaaaagacttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgcagcgtcttcttgaaaggttttattaactgaagtttttagggtaaaagacttggc 260
Query: 61 tctgacagtgccagcgagctagatttggctactgattgctaatattttagttaatgagat 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgacagtgccaacgagctagatttggctactgattgctaatattttagttaatgagat 320
Query: 121 aactagcagtgaagatcagaaaagagatgtattcagtgtgcccgcattggaaaaaggaac 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aactagcagtgaagatcagaaaagagatgtattcggtgtgcccgcattggaaaaaggaac 380
Query: 181 aaataataggatcctctggcttccaagtccctccccaagattctgtcatggagtttaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataataggatcctctggcttccaagtccctccccaagattctgtcatggagtttaggc 440
Query: 241 ttgaatagaggtggaggtatgcatatctaagcagttctggcaggatgaggtcctgcctgt 300
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 441 ttgaatagaggtggaggtatgcatagctaagcaggtctggcaggatgaggtcctgcctgt 500
Query: 301 cattgatccacactggtcctccttccagtctgcccagcaaggtgatctgatactttgtaa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cattgatccacactggtcctccttccagtctgcccagcaaggtggtctgatactttgtaa 560
Query: 361 aaactgtatgaaatctttctacacttgcatagaaagtgacttgcataagggcttcatcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactgtatgaaatctttctacacttgcatagaaagtgacttgcataagggcttcatcct 620
Query: 421 ttctctttccccaggagtctttgattctagcactagggaagcagaggcagggggaactct 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ttctctttccccaggagtctttgattctagcactagggaagcagaggcagagggaactct 680
Query: 481 gggagtccaaggccttagaggtctacatgt 510
||||||||||||||||||||||||||||||
Sbjct: 681 gggagtccaaggccttagaggtctacatgt 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_f16.g1 MSMg01no332_f16.g1 CHROMAT_FILE:
MSMg01no332_f16.g1 PHD_FILE: MSMg01no332_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:43 2005
(607 letters)
>mm_chr2_157371705_157372710
Length = 1006
Score = 1104 bits (571), Expect = 0.0
Identities = 597/611 (97%), Gaps = 12/611 (1%)
Strand = Plus / Minus
Query: 1 agtggctttaaaagagcatttgtgggaagttacaggaacacaagactgtcactgagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agtggctttaaaagagcatttgtgggaagttacaggaacacaagactgtcactgagagcc 736
Query: 61 ctttaaagagtcaagaaggagaacttagagatgtgaaagatgggtgtgtacatggtgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctttaaagagtcaagaaggagaacttagagatgtgaaagatgggtgtgtacatggtgagg 676
Query: 121 ctaggaagaatgagcctgttcgtggacatgagctccaaacatgagagcacacgtcgttca 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 675 ctaggaagaatgagcctgttcgtggacatgagctcc-aacatgagagcacacgtcgttca 617
Query: 181 ctaacacagatcatgtcaccccttcagtctagactgggttcagcctagacttcagcctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctaacacagatcatgtcaccccttcagtctagactgggttcagcctagacttcagcctac 557
Query: 241 tctgggttctttaggcgaagtcaggcacttagta----tttttgtgtagtgacagaggag 296
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 556 actgggttctttaggcgaagtcaggcacttagtagggc----tgtgtagtgacagaggag 501
Query: 297 aaagaggcagtcatgcacgtcagtgcgcagtgtcccacactgatgggtactcttgacaga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagaggcagtcatgcacgtcagtgcgcagtgtcccacactgatgggtactcttgacaga 441
Query: 357 agcacacgccagacccagatgggaaacccagtagaaagtattctgggccgagagcaaccc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agcacacgccagacccagatgggaaacccagtagaaagtattctgggccgagagcaaccc 381
Query: 417 tgggtcagaggcttactccaggatggacagactccagagaggcagacagacagggaggag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgggtcagaggcttactccaggatggacagactccagagaggcagacagacagggaggag 321
Query: 477 ctaaggagatacagggcctggcctttttcatcttaatgttgagggaaggagcgatgctgg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctaaggagatacagggcctggcctttttcatcttaatgttgagggaaggagcgatgctgg 261
Query: 537 tacatggatatcctgcgctgtggagtcagtgtaattgagcaattagggatggaggcaatt 596
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tacatggatatcctgggctgtggagtcagtgtaattgagcaattagggatggaggca--- 204
Query: 597 atttgaaataa 607
|||||||||||
Sbjct: 203 atttgaaataa 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
