Query= MSMg01no332_o01.b1 MSMg01no332_o01.b1 CHROMAT_FILE:
MSMg01no332_o01.b1 PHD_FILE: MSMg01no332_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:48 2005
(655 letters)
>mm_chr2_42266228_42267285
Length = 1058
Score = 1214 bits (628), Expect = 0.0
Identities = 650/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Minus
Query: 1 ttcatctttggtggcagaattcaaacatggttatcatattaccttaaactaaaatagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ttcatctttggtggcagaattcaaacatggttatcatattaccttaaactaaaatagttt 799
Query: 61 tcatcaattaccttggtctgacacataataccacagtaaactttaattttacaacccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tcatcaattaccttggtctgacacataataccacagtaaactttaattttacaacccaca 739
Query: 121 gcattgttagcaaattaaggggtttttgctggtacacattttgcatgaattcattgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcattgttagcaaattaaggggtttttgctggtacacattttgcatgaattcattgtttc 679
Query: 181 atgccattttcaactccaaatatttaaggtctttgatgata-ata--gtcttatttattg 237
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 678 atgccattttcaactccaaatatttaaggtctttgttgatatttaaggtcttatttattg 619
Query: 238 tttatcttttctacctgtgcaaatagacttcctaggacacattcaatgctcattaaatca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttatcttttctacctgtgcaaatagacttcctaggacacattcaatgctcattaaatca 559
Query: 298 aattgcccattcaaatgaatcaggttaattatttagatatggtttctaaaatgcccatct 357
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 558 aattgcccattcaaatgaatcaggttaattatttagatatggtttctaacatgcccatct 499
Query: 358 taattcatgtcatactaggtatcgaaacattaattgattttctctgctataactaactta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taattcatgtcatactaggtatcgaaacattaattgattttctctgctataactaactta 439
Query: 418 gggtttttgtattataacttggacctcaagaatattttgtgaatattttatacagagaac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gggtttttgtattataacttggacctcaagaatattttgtgaatattttatacagagaac 379
Query: 478 cagcttagaaacaaaattagatagtttgaaatagaagaatgaaaccagaggctctaaaga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagcttagaaacaaaattagatagtttgaaatagaagaatgaaaccagaggctctaaaga 319
Query: 538 ggtagatttatcagcgtgaagtaaaatccaatatacattggaacgtggcttgtagtctgg 597
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggtagatttatcagcatgaagtaaaatccaatatacattggaacgtggcttgtagtctgg 259
Query: 598 cttaaagaaactcccttatcccctataacagttcaccactgatctataatatagattc 655
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cttagagaaactcccttatcccctataacagttcaccactgatctataatatagattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1058
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1048
Effective search space: 675960
Effective search space used: 675960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_o01.g1 MSMg01no332_o01.g1 CHROMAT_FILE:
MSMg01no332_o01.g1 PHD_FILE: MSMg01no332_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:48 2005
(847 letters)
>mm_chr2_42087629_42088875
Length = 1247
Score = 1591 bits (823), Expect = 0.0
Identities = 841/847 (99%)
Strand = Plus / Plus
Query: 1 gacttcagaacattcattattatataaaacatgccaggtttaatttgcttcgttttttgc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gacttcagaacattcattattatataaaacatgtcaggtttaatttgcttcgttttttgc 260
Query: 61 tattcaggtgtattacatccattattttgtataaaggggttaaactaattttgttgcaga 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tattcaggtgtattacatccattattttgtataaaggggttaaactaactttgttgcaga 320
Query: 121 aaaacacattctggacaaaggaagaagtttgtgtcactgaaaaaataaaaagctaatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacacattctggacaaaggaagaagtttgtgtcactgaaaaaataaaaagctaatgag 380
Query: 181 ttccagaataaaagcttaactggaagcctaaaggcatcactcagatgctcacacagaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccagaataaaagcttaactggaagcctaaaggcatcactcagatgctcacacagaaat 440
Query: 241 aaacactgaatagatttctgccttggtttagaggcactgatacacatcagtgaggagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacactgaatagatttctgccttggtttagaggcactgatacacatcagtgaggagttc 500
Query: 301 acctgaaaatgaccttcttttatggttatgtgctggccacctgggcattccttcacttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctgaaaatgaccttcttttatggttatgtgctggccacctgggcattccttcacttga 560
Query: 361 ggacttaagcaaggtaaatctgacttgatctaatgattgctctcatctgatctctattga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacttaagcaaggtaaatctgacttgatctaatgattgctctcatctgatctctattga 620
Query: 421 tgagccatcagcaaagttagaaaagaaacattttgtccattatattgatttcctatcatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagccatcagcaaagttagaaaagaaacattttgtccattatattgatttcctatcatt 680
Query: 481 caatcccttcctatatcagcccagaagcaacctgggaaatctattatgtgccccttttat 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 caatcccttcctatatcagcccagaatcaacctgggaaatctattatgtgccccttttat 740
Query: 541 aagctgttctcagtgtttgctactgcagtacaagctgcaaggtaatgttgactttcatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagctgttctcagtgtttgctactgcagtacaagctgcaaggtaatgttgactttcatct 800
Query: 601 aggacatcatggacattgggacaacctcacaatctcttaactcttctaatttaattatct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggacatcatggacattgggacaacctcacaatctcttaactcttctaatttaattatct 860
Query: 661 tttgtttgttctactaatttcatcagttgtgtaagcacccccaaaacaataacaatagca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tttgtttgttctactaatttcatcagttgtgtaagcacccccaaaacaataacaatagca 920
Query: 721 gaataaaacaaacaaacaaacaaacaaacaaacaaacaaactatttgaaatatttgcttc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaataaaacaaacaaacaaacaaacaaacaaacaaacaaactatttgaaatatttgcttc 980
Query: 781 tgtactctccaggagctgaacccaggccacaacattgtgatagctgatttgcctaataat 840
|||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 981 tgtactctccaggagccgaacccaggcaacaacagtgtgatagctgatttgcctaataat 1040
Query: 841 ctgccca 847
|||||||
Sbjct: 1041 ctgccca 1047
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 847
Length of database: 1247
Length adjustment: 10
Effective length of query: 837
Effective length of database: 1237
Effective search space: 1035369
Effective search space used: 1035369
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
