Query= MSMg01no332_p16.b1 MSMg01no332_p16.b1 CHROMAT_FILE:
MSMg01no332_p16.b1 PHD_FILE: MSMg01no332_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:01 2005
(535 letters)
>mm_chr2_48814177_48815111
Length = 935
Score = 996 bits (515), Expect = 0.0
Identities = 530/535 (99%)
Strand = Plus / Plus
Query: 1 tagaagggagagatttcaggtaaagacaaaccttccaatgagaagatgtctttggaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaagggagagatttcaggtaaagacaaaccttccaatgagaagatgtctttggaaaat 260
Query: 61 ttggttttctttttcttttttttgcaaatttggtttttaagtattattttgttgtggcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggttttctttttcttttttttgcaaatttggtttttaagtattattttgttgtggcta 320
Query: 121 gtttgtttttggagacagggtcttactctgtagtgcgtggaatttacagagctctgccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgtttttggagacagggtcttactctgtagtgcgtggaatttacagagctctgccca 380
Query: 181 tctgtctaactctacttcacaaatgctgggactaaaagcatgcaccaccacacgcagccc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tctgtctaactctacttcacaaatgctgggactaaaggcatgcaccaccacacgcagccc 440
Query: 241 aagagatttatttttaatacattaaaacaaatattaatattttaacgtgtaaaaacaaat 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aagagatttatttttaatacattaaaacaaatattaaaattttaacgtgtaaaaacaaat 500
Query: 301 ggtaaagttcaaaataacttggaaaagtaaggatgagattagaaatggtatatatgtaaa 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtaaagttcaaaataacctggaaaagtaaggatgagattagaaatggtatatatgtaaa 560
Query: 361 tttctggttttacttttttattccccaaacctaactcagaaaggaaataagcaggaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctggttttacttttttattccccaaacctaactcagaaaggaaataagcaggaaaat 620
Query: 421 gggaggaaaataatttagtccaagattaagaaaatgagtaatggtgcaataagaactaga 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gggaggaaaataatttagtcaaagattaagaaaatgagtaatggtgcaataagcactaga 680
Query: 481 atgtccattggcatcttaagctagtgtatctgggtattagttgggaatgaaacac 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtccattggcatcttaagctagtgtatctgggtattagttgggaatgaaacac 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_p16.g1 MSMg01no332_p16.g1 CHROMAT_FILE:
MSMg01no332_p16.g1 PHD_FILE: MSMg01no332_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:01 2005
(733 letters)
>mm_chr2_48994976_48996105
Length = 1130
Score = 1029 bits (532), Expect = 0.0
Identities = 573/588 (97%), Gaps = 6/588 (1%)
Strand = Plus / Minus
Query: 147 gtgctataagacctgaggtattttcagactcaaagattaatgacatactgaaagctctat 206
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1130 gtgctataagacctgaggtattttcagactcaaagatcaatgacatactgaaagctctat 1071
Query: 207 taacaaagtcagcaaaagatataaaaagtaatttatacccctaagctacctcccctgaca 266
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 1070 taacaaagtcagcaaaagatat-aaaagtaatttatattcctaagctacctcccctgaca 1012
Query: 267 caattgccaaaataaatctctttctgtatgcaattggctgtgtatctagaaaattcagac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 caattgccaaaataaatctctttctgtatgcaattggctgtgtatctagaaaattcagac 952
Query: 327 aataaatataaaaaattaaatctgaactaaagtcaagtgttatataggaaaaaaagtggc 386
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 951 aataaatataaaaaattaaatctgaactaaagtcaagtgttatatagg-aaaaaagtggc 893
Query: 387 ttttataaagtaggtatgtcaatattttgaaataaatccttagcatactgaatagtatat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ttttataaagtaggtatgtcaatattttgaaataaatccttagcatactgaatagtatat 833
Query: 447 ggacaaaattgaaaaaaattcatgaatagaatatttgcattcataggcacaaacacattg 506
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 832 ggacaaaattgaaaaaaattcacaaatagaatatttgcattcataggcacaaacacattg 773
Query: 507 acacaacacataaacac-gatacgcccaaaatagaaattatatggattaaatacctcaga 565
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 772 acacaacacataaacacggatacacccaaaatagaaattatatggattaaataactcaga 713
Query: 566 aaatagatttcaacaagaagactgacaagcctttctgacaggtacatgtagcttctacag 625
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaatagattt---caagaagactgacaagcctttctgacaggtacatgtagcttctacag 656
Query: 626 gaaattcttctcaagcatatatacatggaccattcatgaaaacggatcacatcttcataa 685
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggaattcttctcaagcatatatacatggaccattcatgaaaacggatcacatcttcataa 596
Query: 686 atgtaaagaatatgaatcacaaaagcagactataagtataatgactta 733
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 595 atgtaaagaatatgaatcacaaaagcagactatgagtataatgactta 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1130
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1120
Effective search space: 809760
Effective search space used: 809760
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
