Query= MSMg01no333_c22.b1 MSMg01no333_c22.b1 CHROMAT_FILE:
MSMg01no333_c22.b1 PHD_FILE: MSMg01no333_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:18 2005
(546 letters)
>mm_chr2_156942759_156943705
Length = 947
Score = 913 bits (472), Expect = 0.0
Identities = 531/564 (94%), Gaps = 22/564 (3%)
Strand = Plus / Plus
Query: 5 gaattctcagatctgtcacctctttgctcacctccttgctcccatctctgctcactcatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaattctcagatctgtcacctctttgctcacctccttgctcccatctctgctcactcatc 243
Query: 65 acaatcactgcaaagatcaaatgaccccagagacatccaccctatcgcgcattttaacaa 124
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 244 acaatcactgcaaagatcaaatgaccccagagacatccgccctattgtgcattttaacaa 303
Query: 125 aactgactcaaaatgaaaacaaacctgaaatgatcctataactattttgaattggctcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aactgactcaaaatgaaaacaaacctgaaatgatcctataactattttgaattggctcaa 363
Query: 185 ctatg---------------------aacagatatcttatcaacgtatgttatcttgatg 223
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 364 ctatgaacagatatctgttcataattaacagatatcttatcaacgtatgttatcttgatg 423
Query: 224 atctgttttctgttttgagtaaaggtcccattacatgacccacattgacctaaactcact 283
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 424 atatgttttctgttttgagtaaaggtctcattacatgacccacattgacctaaactcact 483
Query: 284 acacagcgtggcctggagcttgcaattgtctcc-tgtggcctctggagtaattactggaa 342
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 484 acacagcgtggcctggagcttgcaattgactccttgtggcctctggagtaattactggag 543
Query: 343 aatgctggatcacactgtgtgaattcaggcatacaatcactgtttgaagtacaaaatcat 402
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 544 aatgctggatcacactgtgtgaattcaggcacacaatcactgtttgaagtacaaaatcat 603
Query: 403 attatccaataataataattagggaagcgtgagacatggggttggagaagtggcttagag 462
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 attatccaataatagtaattagggaagcgtgagacatggggttggagaagtggcttagag 663
Query: 463 gttaagaaaacctgctgtccacgccgaggacctgggtttgggctccagcaccagcatggt 522
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gttaagaaaacctgctatccacgccgaggacctgggtttgggctccagcaccagcatggt 723
Query: 523 gactcacaccatccgtgagtgcag 546
|||||||||||||||| |||||||
Sbjct: 724 gactcacaccatccgttagtgcag 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_c22.g1 MSMg01no333_c22.g1 CHROMAT_FILE:
MSMg01no333_c22.g1 PHD_FILE: MSMg01no333_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:18 2005
(665 letters)
>mm_chr2_157024733_157025797
Length = 1065
Score = 1224 bits (633), Expect = 0.0
Identities = 657/665 (98%), Gaps = 2/665 (0%)
Strand = Plus / Minus
Query: 1 tttcagtaagactaaatttggaattaagtaagagatctatttt-tagattagaaatttag 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 771 tttcagtaagactaaatttggaattaagtaagagatctattttgtagattagaaatttag 712
Query: 60 aaaattttctgaattttttttttcatgctatggttctaagaaaaagaagaatgtgggggg 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aaaattttctgaa-tttttttttcatgctatggttctaagaaaaagaagaatgtgggggg 653
Query: 120 tctgtactgatgtttgggattgtgttagccatattttctcagacaaatgaacttataagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tctgtactgatgtttgggattgtgttagccatattttctcagacaaatgaacttataagg 593
Query: 180 cctcttccagacatgtattgtgtttgcattggcctgcagggagaagttatacactggctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cctcttccagacatgtattgtgtttgcattggcctgcagggagaagttatacactggctg 533
Query: 240 gcatgctctttatatgttgcttgccgcaagagcatcattcctactgtgggaaagggcgtc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gcatgctctttatatgttgcttgccgcaagagcatcattcctactgtgggaaagggcgtc 473
Query: 300 atggaaggaaactgtgtctcactcaccagaatactgcgctcagctaagccaacccaagac 359
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 472 atggaaggaaactgtgtctcactcaccagaatactgcgctcagctaagttaaggtaagac 413
Query: 360 attttgagttttccaaatgttttagaagtactagatttgggctgaagaggctggagaggt 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 412 attttgagttttccaaatgttttagaagtactagatttgggctggagaggctggagaggt 353
Query: 420 ggctcgattgggtagagtattcccatcagtaccaggcttcagcgacctggatcctcagcg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggctcgattgggtagagtattcccatcagtaccaggcttcagcgacctggatcctcagcg 293
Query: 480 ctgggggaacgagacaggccaatcctgggggcctcttggctcgccagttcagtcaaaatg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctgggggaacgagacaggccaatcctgggggcctcttggctcgccagttcagtcaaaatg 233
Query: 540 acacctcaatctcaaaattaaagtggagggtgtgtagacatggcccagtgcttaagaggg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acacctcaatctcaaaattaaagtggagggtgtgtagacatggcccagtgcttaagaggg 173
Query: 600 cttgcttttccacagaacctggatttggctctcaacacccatgtcagggctcacaactct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cttgcttttccacagaacctggatttggctctcaacacccatgtcagggctcacaactct 113
Query: 660 gaaac 664
|||||
Sbjct: 112 gaaac 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
