Query= MSMg01no333_f12.b1 MSMg01no333_f12.b1 CHROMAT_FILE:
MSMg01no333_f12.b1 PHD_FILE: MSMg01no333_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:30 2005
(553 letters)
>mm_chr2_12401548_12402500
Length = 953
Score = 775 bits (401), Expect = 0.0
Identities = 427/436 (97%)
Strand = Plus / Minus
Query: 118 aaataaatgttttttaaaattgtagtattttcatataacctaaacacatctgtgcataca 177
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 aaataaatgtttttaaaaattgtagtattttcatataacctaaacacatctgtgcataca 894
Query: 178 tttttaatatcctgaagcacataaaatacctgtacaatgtaaataaactgcaagtggtaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 tttttaatatcctgaagcacataaaatacctgtacaatgtaaataaactgcaagtggtaa 834
Query: 238 ataccaaatgttctaagaataatgacaagaaggaagtaactatataagttcactacagaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ataccaaatgttctaagaataatgacaagaaggaagtaactatataagttcactacagaa 774
Query: 298 aaattaaaaataaatattttcaattcacatttgttaaacttccacttgcgccatcaacac 357
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 773 aaattaaaaataaatattttcaattcacattcgttaaacttccacttgtgccatcaacac 714
Query: 358 agaaggccaagtatatactcatattcggcaagtgcatatggatgttacagaacccaatta 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agaaggccaagcatatactcatattcggcaagtgcatatggatgttacagaacccaatta 654
Query: 418 taattttgaagaaatgttaatgtgtatgaagtcagtcagaaagtctataanatgtgtagc 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 653 taattttgaagaaatgttaatgtgtatgaagtcagtcagaaagtctataaaatgtgtagc 594
Query: 478 atacataatgtacatattttaatcctaattttgggaaagtatgcaaccctgctttattct 537
||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 593 atacataatatacatatttttatcctaatttttggaaagtaagcaaccctgctttattct 534
Query: 538 tctgttttatgttgtt 553
||||||||||||||||
Sbjct: 533 tctgttttatgttgtt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_f12.g1 MSMg01no333_f12.g1 CHROMAT_FILE:
MSMg01no333_f12.g1 PHD_FILE: MSMg01no333_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:30 2005
(520 letters)
>mm_chr2_12233189_12234108
Length = 920
Score = 944 bits (488), Expect = 0.0
Identities = 512/520 (98%), Gaps = 1/520 (0%)
Strand = Plus / Plus
Query: 1 accatcagaatggtcaaaccccatcagatcccagcttttttgtgtgtctacacgtttgtc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 accatcagaatggtcaaaccccatcagatcccagcttttttgtgtgtctacatgtttgtc 260
Query: 61 ttttcttcattcccttgtcgtccctgtcaggtctgttcctggagcaaggacaaggacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcttcattcccttgtcgtccctgtcaggtctgttcctggagcaaggacaaggacatg 320
Query: 121 gcaaaaagatgtttcagaaatgtttaacaagtgaatgaaggacagctggggaatcgttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaaagatgtttcagaaatgtttaacaagtgaatgaaggacagctggggaatcgttcc 380
Query: 181 tacatatttagattagtctctgtggaaaaaataaaacatcacagttagaataaagactga 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tacatatttagattagtctctgtggaaaaaataaaacatcagagttagaataaagactga 440
Query: 241 atcagggacagggagacatgacagacgcaaagcagaggccaacagaactgtgtgactggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagggacagggagacatgacagacgcaaagcagaggccaacagaactgtgtgactggc 500
Query: 301 tgacaggaaagaccgggagctatgactggcaggatttacccccaccgccagggataaaag 360
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 501 tgacaggaaagaccgggagctatgactggcaggatttacccccagtgctagggataaaag 560
Query: 361 tcggagccctgcatgtgtagggcaagtgctctgccactgagcaacattccccagcactga 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcggagccctgcatatgtagggcaagtgctctgccactgagcaacattccccagcactga 620
Query: 421 cttttgagacaaaaatctcattattacaaataatgatcccactgcctccactttcgcaag 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttttgagacaaaa-tctcattattacaaataatgatcccactgcctccactttcgcaag 679
Query: 481 tgttgtgattatagtctcttaccaccatgcctgacctgaa 520
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 tgttgtgattatagtctcttaccagcatgcctgacctgaa 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
