Query= MSMg01no334_c02.b1 MSMg01no334_c02.b1 CHROMAT_FILE:
MSMg01no334_c02.b1 PHD_FILE: MSMg01no334_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:27 2005
(678 letters)
>mm_chr2_40972094_40973172
Length = 1079
Score = 1255 bits (649), Expect = 0.0
Identities = 669/676 (98%), Gaps = 1/676 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcagtgttatctccctccaaagtgaaatttctctttcccctggttccatataa 63
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 879 ggaattctcagtgttatctccctccaaagtgaaatttctctttcccctagttccatataa 820
Query: 64 gccat-agccatctatctcatctaccctcaaatctttccatttctttgtgtagacattgg 122
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gccataagccatctatctcatctaccctcaaatctttccatttctttgtgtagacattgg 760
Query: 123 tcagattcaacctttcgcttcattgaaagacctatcagtgactcagcaagatctctgaaa 182
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcagattcaaacttttgcttcattgaaagacctatcagtgactcagcaagatctctgaaa 700
Query: 183 atagttttgacttcctaaaatttatccataatgtaaaagttacatctcagttcatgagcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atagttttgacttcctaaaatttatccataatgtaaaagttacatctcagttcatgagcc 640
Query: 243 aagaaacttaatatttataacaatagtcgattatttctatggactccctctgccctcttt 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagaaacgtaatatttataacaatagtcgattatttctatggactccctctgccctcttt 580
Query: 303 tttgaaagcatttcataaattgttacatgaatggacctttttcatttttgcagctaagag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tttgaaagcatttcataaattgttacatgaatggacctttttcatttttgcagctaagag 520
Query: 363 tagaaatgatttctaggaaataattactagtatttgaaaacactagtgacagttgtccct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tagaaatgatttctaggaaataattactagtatttgaaaacactagtgacagttgtccct 460
Query: 423 ctacacattggcatgcatttatttattgacttgacttcggtggaaaagacattaaaatga 482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 459 ctacacattggcatgcatttatttattgacttgatttcggtggaaaagacattaaaatga 400
Query: 483 aaggtttatgaaaattattcaaaatgatttccaagtaatgttaacatagaattttaagtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaggtttatgaaaattattcaaaatgatttccaagtaatgttaacatagaattttaagtg 340
Query: 543 ctaaaattcccatcttggaaataaaatacagcattttacaattctgtttgaaactaanac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 339 ctaaaattcccatcttggaaataaaatacagcattttacaattctgtttgaaactaaaac 280
Query: 603 atggcaagtgaaactgtccagggaaaaggggacataatggaataaattagctaaattcaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atggcaagtgaaactgtccagggaaaaggggacataatggaataaattagctaaattcaa 220
Query: 663 gatataaatgtgccat 678
||||||||||||||||
Sbjct: 219 gatataaatgtgccat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space: 714092
Effective search space used: 714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_c02.g1 MSMg01no334_c02.g1 CHROMAT_FILE:
MSMg01no334_c02.g1 PHD_FILE: MSMg01no334_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:28 2005
(548 letters)
>mm_chr2_40808716_40809663
Length = 948
Score = 1006 bits (520), Expect = 0.0
Identities = 541/548 (98%)
Strand = Plus / Plus
Query: 1 tcatacccagaaatgttttgcccaagaacagattagagacaaaataattaattaagcctt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tcatacccagaaatgttttgcccaagaacagattagagacacaataattaattaagcctt 260
Query: 61 atattttaaataggtttacaataaatgtttcttgtggcctatgaatgagttcatttataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattttaaataggtttacaataaatgtttcttgtggcctatgaatgagttcatttataa 320
Query: 121 tagaaaaagaaaaatgtggggaaaaatgatttctattttgtagttaatttaaaattcaac 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tagaaaaagaaaaatgtgaggaaaaatgatttctattttgtagttaatttaaaatttaat 380
Query: 181 gctttatttgtctacatgttaatatgcatttatctacatttcaaaccctgacactttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttatttgtctacatgttaatatgcatttatctacatttcaaaccctgacactttgca 440
Query: 241 cctacttttctgtaattgatttaattaaatattttaaaatataacatttaacgattccat 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 cctacttttctgtaattgatttaattaaatattttaaaatataacagttaacgattccat 500
Query: 301 aaaatgcttttattctctgctttaatttgacaccactaaaagccattatttcttcatttc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aaaatgcttttattctctgctttaatttgacaccactacaagccattatttcttcatttc 560
Query: 361 catgaatttaagctatttaataaattccattttaaagaaaaacatctagaggcactctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgaatttaagctatttaataaattccattttaaagaaaaacatctagaggcactctgt 620
Query: 421 gtagcttcaaagtgcaaagttccttcaccttatttaactatctccatgtgctagccactc 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagcttcaaagtgcaatgttccttcaccttatttaactatctccatgtgctagccactc 680
Query: 481 tatcttgatccttccattcattctttgcatcatgacatgaaagctataaaaaatacatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatcttgatccttccattcattctttgcatcatgacatgaaagctataaaaaatacatac 740
Query: 541 tgagtaac 548
||||||||
Sbjct: 741 tgagtaac 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
