BAC Information

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BAC

Clone NameMSMg01-334F04
Chromosome2 (Build37)
Map Location 82,665,963 - 82,666,490
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334F04.T7 (MSMg01no334_f04.b1)MSMg01-334F04.TJ (MSMg01no334_f04.g1)
ACCAG449848AG449849
length702699
length of high quality
(start - end)
658 (45 - 702)532 (81 - 612)
definitionCHROMAT_FILE: MSMg01no334_f04.b1 PHD_FILE: MSMg01no334_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:43 2005CHROMAT_FILE: MSMg01no334_f04.g1 PHD_FILE: MSMg01no334_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGTCCATACCTAAACATAGTAAAAGCAATATACAGCAAACCAAT
AGCCAACATCAAACTAAATGGGGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTCTCTCTCTACATATTCAATATAGTA
CTTGAAGTCCTATTTGGAGCAATTAAACAACCAAAGGAGGTCAAAGGGAT
ACAAACTAGAAAGGGAGAAGTCAAAATATCACTATTTGCAGATGATATGA
TAGTATAATTAAGTGACCCCAAAAATTCCACCATAGAACTCCTAAACCTG
ATAAACAACTTCAGCAAAGTTACTGGATATAAAATTAACTCAAACAAATC
AGTAACATTCTTCTATTCAAAGGATAAACAGACTGAGAAAGATAGGGAAA
CAACACCCTTCACAATAGTCACAAATAAAATAAAATACCTTGGTGTAACT
CTAACCAAGCAAATGAAAAATCAGTGTGACAAGAATTTCAAGTCTCTGAA
GAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCGTGCTCAT
GGATTGGCAGGATTAATAATAGTAAAAATTGCCATCATGCCAAAAGCAAT
CTACAGATTCAGTGCACGCTCCACCAAAATTCCAGCTCAATTCTTCATAG
AG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTCACAGAGACAAAGA
GGATCCTAGTAAAAAGATAGCCTGAGCATCCAGAGAGGCCATTTGGAATC
TGTAGCATGATATAAGCTTACCTATATAGACTAAAATTTCATGATACCGA
GGAACGACTAAGAAACCGAAAAGATTTTTGAGACTGGAAGAAGTAGAAAT
TTCAGTTGCCCAGACCTAAAGACCCCCTGTGAACACCCAGAGCACTTAAT
ATTAATTTCGGAAGGGTCACATCGTAAAAATAGGATCAAACGTTCACTGG
AATCAGGATCTTCATCACCTCTGTATAAGCTAATCTCAAGGAATCAAATC
TATGAACTAGCAGTTCATTATATCCCAGATCAAAGTCCACCAATTTTTAA
ATATTGCAATTAAAAAATAATATTGAATGTCTAACATCTTGTTATGTTAT
GTATAAATAGTTCAAATCTATTAAATAATCATAAAAATTCTTTCAGAAAA
ATATCATTGCTATGATAATAAATTAAAAAGAAATATAAATATTGTAAGTA
TGCCCTCATGGTTAAGCGAAATTATTAGTTTTACCAGGTAGAGAGTTAAC
TTAGGAGCAATTAAATAACATTTATGTGCATGCAAGATTAAGGAGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_f04.g1 MSMg01no334_f04.g1 CHROMAT_FILE:
MSMg01no334_f04.g1 PHD_FILE: MSMg01no334_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:43 2005
         (532 letters)



>mm_chr2_82665763_82666690
          Length = 928

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/532 (99%), Gaps = 4/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacctcacagagacaaagaggatcctagtaaaaagatagcctgagcatccagagaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacctcacagagacaaagaggatcctagtaaaaagatagcctgagcatccagagaggcc 260

                                                                       
Query: 61  atttggaatctgtagcatgatataagcttacctatatagactaaaatttcatgataccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttggaatctgtagcatgatataagcttacctatatagactaaaatttcatgataccga 320

                                                                       
Query: 121 ggaacgactaagaaaccgaaaagatttttgagactggaagaagtagaaatttcagttgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacgactaagaaaccgaaaagatttttgagactggaagaagtagaaatttcagttgcc 380

                                                                       
Query: 181 cagacctaaagaccccctgtgaacacccagagcacttaatattaatttcggaagggtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacctaaagaccccctgtgaacacccagagcacttaatattaatttcggaagggtcac 440

                                                                       
Query: 241 atcgtaaaaataggatcaaacgttcactggaatcaggatcttcatcacctctgtataagc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 atcgtaaaaataggatcaaacgttcactggaatcaggatcttcatcacctctgtgtaagc 500

                                                                       
Query: 301 taatctcaaggaatcaaatctatgaactagcagttcattatatcccagatcaaagtccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatctcaaggaatcaaatctatgaactagcagttcattatatcccagatcaaagtccac 560

                                                                       
Query: 361 caatttttaaatattgcaattaaaaaataatattgaatgtctaacatcttgttatgttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatttttaaatattgcaattaaaaaataatattgaatgtctaacatcttgttatgttat 620

                                                                       
Query: 421 gtataaatagttcaaatctattaaataatcataaaaattctttcagaaaaatatcattgc 480
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 621 gtataaatagttcaaatctattaaataatcataaaaattc----agaaaaatatcattgc 676

                                                               
Query: 481 tatgataataaattaaaaagaaatataaatattgtaagtatgccctcatggt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatgataataaattaaaaagaaatataaatattgtaagtatgccctcatggt 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 928
Length adjustment: 10
Effective length of query: 522
Effective length of database: 918
Effective search space:   479196
Effective search space used:   479196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)