BAC Information

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BAC

Clone NameMSMg01-334L11
Chromosome2 (Build37)
Map Location 121,260,279 - 121,260,906
singlet/doubletsinglet
Overlap genePdia3
Upstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
Downstream geneEll3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334L11.T7 (MSMg01no334_l11.b1)MSMg01-334L11.TJ (MSMg01no334_l11.g1)
ACCAG450143AG450144
length710714
length of high quality
(start - end)
631 (46 - 676)517 (75 - 591)
definitionCHROMAT_FILE: MSMg01no334_l11.b1 PHD_FILE: MSMg01no334_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:14 2005CHROMAT_FILE: MSMg01no334_l11.g1 PHD_FILE: MSMg01no334_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAAGCCATCTCCAAAATTCAGAAGATCCCAGATATTTGTAACCA
TGAAGTAGAATGAGCCTGGTATGTGTTTAGCTGGTCTCTGTGAACATCTC
TGTATGCTATAGACACTAGGGGGCAGTCAAGACCAAGTGTGTAAACAATA
GTTGGGGAAAAAAATAACAGTATAGTAACTAATGAAGTCTACCCTTAATA
TGTATATAAACTTCCAGCTCAAACTCATATTCAGAAGAGGATTTAGACTT
ACTTTTTCTCCCAGCTCTTTATACTTGGGTTCCAGATTCTTACAGTGGCC
ACACCAAGGGGCGTAAAATTCAATCAGCACGTCCTTATCTTCTTCATTCA
CTATGTCATCAAAATTCTCTGCTACCACAACCTAGAAAACACAGGAGACT
CACTAGTCACAAGGAAGCTGGAAAATAAACCCACAAGCTCTAACTGTTCT
GGACTGAAATCACCTCAACTTGTATCACAACATTCCTCAACACGTTGTTA
TTTCCCTTGATCCAACTTACCCTCACAGCTATTCCTGTCAAACTATGTTC
AGCAGTCAGAGGAGATAAAAAACCACATGCTACCCAGTGCTTTCCTTTCT
TCTTTAAAATTACTTGTGTGTAAGCTGGGCGTGTTGGCGCACGCCTTTAA
TCCCAGTACC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGTATGGTCTACATTAATGA
GTTCCAGGCCAGCCAGGGCTACAGAAAGGCTCTGTCTTAAACAAAAGATG
AATGTAAGAGAGTACAAAAAGATTAGAAACAATATGGCAAAATGTCCCTG
TGTTGATCTAGGCAGAGTGTTCAGGAAAATAAAGTCAAGTATAGTGGCTC
ATACCTTTAGTGTAGGACTTAGAAGGCTACAGCAGGAGCAGTAGAAGGAG
GGCTATGAGTTCCAGGCGAGCCTATTCAACAGAGTGACATTTTGTACCAC
CTGCGTGAAAATACTGCAGCAAGAAAGTTTATTAGTTTAACCACTATTGC
TTGGTTTTGTTCATTCATTGATTGGATTTCTTTTTTCCTTTCAAGATAGA
ATGACACACTATGTATTCCAGGCTGGACTGGGACTCTGTAAACCATGCTA
ACTTCAAAGTTGCGGCAATCTTCCTACTTCTGCCTCCTGGGTGCTAGAAT
TAAAGCCATGGACTACCACCATGGACATTTTGACCTTTTTTAAGTACATG
GCTTGGCACCATTGGGTACACTCACATTGTGTGTTACAACCATCTTCATC
TCTGTGTTCTTCATCTTTACGACTGTCCATATTAAATGTTAACTCCTTAT
CCTCCTCTCCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_l11.b1 MSMg01no334_l11.b1 CHROMAT_FILE:
MSMg01no334_l11.b1 PHD_FILE: MSMg01no334_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:14 2005
         (631 letters)



>mm_chr2_121260075_121261106
          Length = 1032

 Score = 1191 bits (616), Expect = 0.0
 Identities = 625/628 (99%), Gaps = 1/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataagccatctccaaaattcagaagatcccagatatttgtaaccatgaagtaga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattcataagccatcaccaaaattcagaagatcccagatatttgtaaccatgaagtaga 773

                                                                       
Query: 65  atgagcctggtatgtgtttagctggtctctgtgaacatctctgtatgctatagacactag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 atgagcctggtatgtgtttagctggtctctgtgaacatctctgtatgctatagacactag 713

                                                                       
Query: 125 ggggcagtcaagaccaagtgtgtaaacaatagttggggaaaaaaataacagtatagtaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggggcagtcaagaccaagtgtgtaaacaatagttggggaaaaaaataacagtatagtaac 653

                                                                       
Query: 185 taatgaagtctacccttaatatgtatataaacttccagctcaaactcatattcagaagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 taatgaagtctacccttaatatgtatataaacttccagctcaaactcatattcagaagag 593

                                                                       
Query: 245 gatttagacttactttttctcccagctctttatacttgggttccagattcttacagtggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gatttagacttactttttctcccagctctttatacttgggttccagattcttacagtggc 533

                                                                       
Query: 305 cacaccaaggggcgtaaaattcaatcagcacgtccttatcttcttcattcactatgtcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cacaccaaggggcgtaaaattcaatcagcacgtccttatcttcttcattcactatgtcat 473

                                                                       
Query: 365 caaaattctctgctaccacaacctagaaaacacaggagactcactagtcacaaggaagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caaaattctctgctaccacaacctagaaaacacaggagactcactagtcacaaggaagct 413

                                                                       
Query: 425 ggaaaataaacccacaagctctaactgttctggactgaaatcacctcaacttgtatcaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggaaaataaacccacaagctctaactgttctggactgaaatcacctcaacttgtatcaca 353

                                                                       
Query: 485 acattcctcaacacgttgttatttcccttgatccaacttaccctcacagctattcctgtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acattcctcaacacgttgttatttcccttgatccaacttaccctcacagctattcctgtc 293

                                                                       
Query: 545 aaactatgttcagcagtcagaggagataaaaaaccacatgctacccagtgctttcctttc 604
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 292 aaactatgttcagcagtcagaggagataaaaaaccaaatgctacccagtgctttcctttc 233

                                       
Query: 605 ttcttt-aaaattacttgtgtgtaagct 631
           |||||| |||||||||||||||||||||
Sbjct: 232 ttctttaaaaattacttgtgtgtaagct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space:   634662
Effective search space used:   634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)