BAC Information

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BAC

Clone NameMSMg01-334M10
Chromosome2 (Build37)
Map Location 122,455,419 - 122,520,946
singlet/doubletdoublet
Overlap geneSpata5l1, AA467197, Slc30a4
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm
Downstream genePldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334M10.T7 (MSMg01no334_m10.b1)MSMg01-334M10.TJ (MSMg01no334_m10.g1)
ACCAG450188AG450189
length675679
length of high quality
(start - end)
591 (69 - 659)501 (73 - 573)
definitionCHROMAT_FILE: MSMg01no334_m10.b1 PHD_FILE: MSMg01no334_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:18 2005CHROMAT_FILE: MSMg01no334_m10.g1 PHD_FILE: MSMg01no334_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,520,448 - 122,520,946)(122,455,419 - 122,455,919)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACACGGATCCGCGGA
ATTCTTCTATGCCATTTGATGCTCAACCCTTCCTGAATAACAGAAAGCAT
ATCTTCTTTCTGCTTTGTTGTGGTATTTAGATACCGTAGCTATTAACTCA
CTGTATTTGTAGAATTAATAAGTTGAGCAAAAGTTCCCATCCTGCTTTTA
TTTTTACTGCCAATTTAATGGGTAACTTTATGAAGTAATGAACACTGAAG
ACCCTGTTAATAGAAATGAGGTTTTCACCAGACTTTTGAGCAGTGGTCCT
TCCATACCTACATATTCCATGTCCACAGGTGCTACATCTATGTTTCAGCT
GGAAAATACTTGAAATATATGTCTGAATAGAATATATACAGGCTTGTTTT
CTTGTAGTAATTCCCTAAATAATGCAGTGTAAATAAGTACATTGTATTAG
ATGGTATCAGTAACCTAGAAATAATATAAACTATGTATAGATTTATATGT
ACAAGCTGTATACATATACACCATATTATAGAATATATTTGAGCATGCAC
AGATTTTGATACCTAAATCTTCATATAAGTTGAAGGATATGGCATCTATA
CTATTTTGCATGAAACTTTAGAATACTTTGATTTAGTTGTGTCAGGATGG
AAATTTAGTTCAGTTGTGTTTTGCG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGATGTATGGATGACTGAAACAATACAA
TGAAAATGGTCTGACTCAGAGGAGCAGGATGGGTTAAGGCTGCCTGGGAA
AGATAATCTATAGTTTTACTGAGAATGTGTGAATGAGTTGAGGGCCCAGA
AACACAATCCCTTCCTGATATTTGTGACACAAGGAGGGGAGTGGCTGTTT
TAGTGGGGATGCTGTATATTTCTTGGCCAAGGTCAGAGAACTTTATAGTT
TGGCCCTGAACGGGATCAGCCTCTTTATGCAACACGAAACAACATGTACT
GTCCTCCACACCATATCCCCACTAACTTAGCCTCTACCCCTGTTTTAAAT
CAGTGCTGAAATCTGTAAGGTTAAGTTCACTCTAATTGCCTCAGTGGGCA
TCAGTTATGACTCTCAGCTGTACCTTTCATGCGACCATGGTCAAAATATG
CAGAGAAAAACCTCTTAAGATCACCCTATTAAACTTCCGTTTCCTGGCCA
GTTCTTTACCACAGCTATCCACACACACGCTAGCTTTCACACACCTCCCT
TTACATATTGAAGATGGTTATTATGTCTTATTATTAATGTCTTCTTTCCC
ATTTCTAGACGCTCCATGTCTTTGGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_m10.b1 MSMg01no334_m10.b1 CHROMAT_FILE:
MSMg01no334_m10.b1 PHD_FILE: MSMg01no334_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:18 2005
         (591 letters)



>mm_chr2_122520448_122521438
          Length = 991

 Score =  926 bits (479), Expect = 0.0
 Identities = 494/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcaacccttcctgaataacagaaagcatatcttctttctgctttgttgtggtatttagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcaacccttcctgaataacagaaagcatatcttctttctgctttgttgtggtatttagat 440

                                                                       
Query: 65  accgtagctattaactcactgtatttgtagaattaataagttgagcaaaagttcccatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 accgtagctattaactcactgtatttgtagaattaataagttgagcaaaagttcccatcc 380

                                                                       
Query: 125 tgcttttatttttactgccaatttaatgggtaactttatgaagtaatgaacactgaagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgcttttatttttactgccaatttaatgggtaactttatgaagtaatgaacactgaagac 320

                                                                       
Query: 185 cctgttaatagaaatgaggttttcaccagacttttgagcagtggtccttccatacctaca 244
           |||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 319 cctgttaatagaaatggggttttcaccagaaatttgagcagtggtcattccatacctaca 260

                                                                       
Query: 245 tattccatgtccacaggtgctacatctatgtttcagctggaaaatacttgaaatatatgt 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatcccatgtccacaggtgctacatctatgtttcagctggaaaatacttgaaatatatgt 200

                                                                       
Query: 305 ctgaatagaatatatacaggcttgttttcttgtagtaattccctaaataatgcagtgtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctgaatagaatatatacaggcttgttttcttgtagtaattccctaaataatgcagtgtaa 140

                                                                       
Query: 365 ataagtacattgtattagatggtatcagtaacctagaaataatataaactatgtatagat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ataagtacattgtattagatggtatcagtaacctagaaataatataaactatgtatagat 80

                                                                       
Query: 425 ttatatgtacaagctgtatacatatacaccatattatagaatatatttgagcatgcacag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ttatatgtacaagctgtatacatatacaccatattatagaatatatttgagcatgcacag 20

                              
Query: 485 attttgatacctaaatctt 503
           |||||||||||||||||||
Sbjct: 19  attttgatacctaaatctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_m10.g1 MSMg01no334_m10.g1 CHROMAT_FILE:
MSMg01no334_m10.g1 PHD_FILE: MSMg01no334_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:19 2005
         (501 letters)



>mm_chr2_122455219_122456119
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgtatggatgactgaaacaatacaatgaaaatggtctgactcagaggagcaggatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgtatggatgactgaaacaatacaatgaaaatggtctgactcagaggagcaggatgg 260

                                                                       
Query: 61  gttaaggctgcctgggaaagataatctatagttttactgagaatgtgtgaatgagttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaaggctgcctgggaaagataatctatagttttactgagaatgtgtgaatgagttgag 320

                                                                       
Query: 121 ggcccagaaacacaatcccttcctgatatttgtgacacaaggaggggagtggctgtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcccagaaacacaatcccttcctgatatttgtgacacaaggaggggagtggctgtttta 380

                                                                       
Query: 181 gtggggatgctgtatatttcttggccaaggtcagagaactttatagtttggccctgaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggggatgctgtatatttcttggccaaggtcagagaactttatagtttggccctgaacg 440

                                                                       
Query: 241 ggatcagcctctttatgcaacacgaaacaacatgtactgtcctccacaccatatccccac 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ggatcagcctctttatgcaacacgaaaaaacatgtactgtcctccacaccatatccccac 500

                                                                       
Query: 301 taacttagcctctacccctgttttaaatcagtgctgaaatctgtaaggttaagttcactc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 taacttagcctctacccctgttttaaatcagtgctgaaatctgaaaggttaagttcactc 560

                                                                       
Query: 361 taattgcctcagtgggcatcagttatgactctcagctgtacctttcatgcgaccatggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattgcctcagtgggcatcagttatgactctcagctgtacctttcatgcgaccatggtc 620

                                                                       
Query: 421 aaaatatgcagagaaaaacctcttaagatcaccctattaaacttccgtttcctggccagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 aaaatatgcagagaaaaacctcttaagatcaccctattaaacttccgtttcctggtcagt 680

                                
Query: 481 tctttaccacagctatccaca 501
           |||||||||||||||||||||
Sbjct: 681 tctttaccacagctatccaca 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)